Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq12 149 1e-33 seq2 118 2e-24 seq3 82.4 1e-13 >seq12 Length=23561512 Score = 149 bits (164), Expect = 1e-33 Identities = 204/285 (72%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| |||| |||||| | | |||||| || ||| || |||||||| | Sbjct 15985491 GCTTTCGTCTCTCAATGTCAGTATCGGCCCAGCAGAGTGCTTTCACCGTTGGTGTTCTTT 15985432 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || || | ||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 15985431 CTGATCTCAATGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 15985372 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | |||||| Sbjct 15985371 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAA 15985312 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| || ||| Sbjct 15985311 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTA 15985252 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||||||| || Sbjct 15985251 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATA 15985207 Score = 104 bits (114), Expect = 4e-20 Identities = 164/234 (70%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 59 GTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGC 118 |||||| |||| ||||||| |||||||| ||||||||| |||||| | ||||| | Sbjct 17367142 GTTCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTC 17367201 Query 119 ACTCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATC 175 ||||||| || ||||||| ||| || | ||| | |||||| | Sbjct 17367202 ACTCAAGTGAATTGGTTTCAAGAGCATTCCGCCACTTTTTGGTGAC-----TTTCACTTT 17367256 Query 176 TGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCAC 235 || | | |||||||| ||||||||| || | | | |||| | ||| |||||| | Sbjct 17367257 CAACCCGATTCACCGCCTACGTGCCCTTTACGCCTAGTCATTCCGAAGAACACTTGCCCC 17367316 Query 236 CTACG----TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 | | | |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 17367317 CCCCTCCCATCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 17367370 Score = 86.0 bits (94), Expect = 1e-14 Identities = 80/101 (79%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC---GTATT 244 |||||||| ||||||||| || | | | |||| | ||| |||||| || | || || Sbjct 11407815 CCGCCTACGTGCCCTTTACGCCTAGTCATTCCGAAGAACACTTGCCCCCCCCCCGGTCTT 11407756 Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 |||||||||| ||||||| ||||||||| ||||| |||||| Sbjct 11407755 ACCGCGGCTGTTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 11407715 >seq2 Length=33962743 Score = 118 bits (130), Expect = 2e-24 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210 ||||||||||| | ||| || | |||||| || |||||| | |||||| ||| Sbjct 723217 GGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAAAGCCACCTACAGACGCTTTACGCCC 723276 Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270 ||| | |||||||||||||||| ||| || ||||||||||||||||||| ||||||| Sbjct 723277 AATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCACAGAGTTAGC 723336 Query 271 CGTGGCTTATTCCTCAGGTA 290 || ||||||||||||| || Sbjct 723337 CGATGCTTATTCCTCAGATA 723356 Score = 84.2 bits (92), Expect = 4e-14 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 722956 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 723015 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || || | ||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 723016 CCGATCTCAATGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 723075 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | |||||| Sbjct 723076 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAA 723135 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCT 229 || |||||| | |||||| || ||| | |||||||||| || Sbjct 723136 AGCCACCTACAGACGCTTTACGCCTAATCATTCCGGATAACACT 723179 >seq3 Length=34446443 Score = 82.4 bits (90), Expect = 1e-13 Identities = 77/97 (79%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 190 GCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTA-TTACCG 248 |||||| |||||||||| | | | | ||| | ||| |||||| || | | |||||| Sbjct 22408379 GCCTACGTGCCCTTTACAACTAGTCATTCCAAAGAACACTTGCCCCCCCCTTCCTTACCG 22408320 Query 249 CGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 |||||||||||||| ||||||||| ||||| |||||| Sbjct 22408319 CGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 22408283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828769345278