Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq12 84.2 2e-14 seq8 80.6 2e-13 >seq12 Length=23561512 Score = 84.2 bits (92), Expect = 2e-14 Identities = 92/121 (76%), Gaps = 6/121 (5%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCG---GATCACTATGAC 57 || ||||||||||||||||||||||||||||| || | ||||| |||||||| | | Sbjct 5177960 TAACTTTTATCCGTTGAGCGATGGCCCTTCCACTC---GGCACCGTCTGATCACTAAGGC 5178016 Query 58 CTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 | ||||| ||||||| | || ||| ||| |||||| | ||| |||| |||||| Sbjct 5178017 CGACTTTCATCTCTGCTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCAC 5178076 Query 118 T 118 | Sbjct 5178077 T 5178077 Score = 82.4 bits (90), Expect = 5e-14 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| || ||||||| || || |||||||||| | || Sbjct 5178683 TAACTTTTATCCGTTGAGCGACGGACCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 5178742 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| ||||||| | || ||| ||| |||||| | ||| |||| ||||||| Sbjct 5178743 CTTTCGTCTCTGCTCGATGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 5178800 >seq8 Length=25958679 Score = 80.6 bits (88), Expect = 2e-13 Identities = 91/121 (75%), Gaps = 6/121 (5%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCG---GATCACTATGAC 57 || |||||||||||||||||| |||| ||||| || | ||||| |||||||| | | Sbjct 8030763 TAACTTTTATCCGTTGAGCGACGGCCTTTCCACTC---GGCACCGTCTGATCACTAAGGC 8030819 Query 58 CTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 | |||||| ||||||| | || ||| ||| |||||| | ||| |||| |||||| Sbjct 8030820 CGACTTTCGTCTCTGCTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCAC 8030879 Query 118 T 118 | Sbjct 8030880 T 8030880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351987400600