Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq11 77.0 3e-12 >seq11 Length=27785585 Score = 77.0 bits (84), Expect = 3e-12 Identities = 76/97 (78%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 94 TTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTC 153 ||||||| ||| ||| | ||| || |||||||| |||| ||| ||||||||| | Sbjct 23576530 TTCTATTGTGTTGGTATTCGGGATCGGA-GTAATGATTAATAGGGACAGTCGGGGGCATT 23576472 Query 154 AGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||||| || |||| ||||||||||||||||||||| Sbjct 23576471 CGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 23576435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511981062720