Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq2 223 8e-56 seq7 176 1e-41 seq12 172 1e-40 seq3 150 4e-34 seq5 116 9e-24 seq11 75.2 3e-11 >seq2 Length=33962743 Score = 223 bits (246), Expect = 8e-56 Identities = 298/410 (73%), Gaps = 31/410 (8%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||| | | ||||| |||| ||| |||||||| | |||||| Sbjct 723387 TTGACGACCCGTGGGCCTTCCACCTCCACGCAGCATTGCTCTGTCAGGCTTTCTCCCATT 723446 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||| |||| |||||||||||||||||| |||||||||||| ||||||| Sbjct 723447 GCGGAAAATTCCCCATTGCTACCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 723506 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 723507 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 723566 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| || | || | || || |||| Sbjct 723567 ACTAGCTAATCAAACGCGAGCCCCTCC----TTGGGTGG-----ATTTCTCC--TTTTGC 723615 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | || || | ||||||| | |||||||||||| ||| | ||||||| ||||| Sbjct 723616 TCCT-CAAC-CTACGGGGTATTACCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAAGGCA 723673 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||| || | ||||||| ||| || || |||| Sbjct 723674 GGTTCTTACGCGTTACTCTGCC-TTCGCCACT------GGAAACACCA-----CTTC--- 723718 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||| ||||||||| || ||||||||||||||| ||||| Sbjct 723719 ---CCGTTCGACTTTCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 723765 >seq7 Length=26200591 Score = 176 bits (194), Expect = 1e-41 Identities = 138/165 (84%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 |||||||||| || |||||||| ||||||||| | || |||||||||||||| |||| Sbjct 18931224 CACGCGGCATTACTCTGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGTCTCC 18931165 Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 ||||||||||||| | |||| ||||| |||||||||||| |||||||||| ||||||||| Sbjct 18931164 CGTAGGAGTCTGGGCTGTGTATCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTA 18931105 Query 151 GGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 ||| |||||| ||| || ||| || | |||||||||||||| Sbjct 18931104 CTAATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATC 18931060 Score = 131 bits (144), Expect = 4e-28 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||||||| |||| | || |||| ||| ||||| |||||||||| ||| |||||||| Sbjct 11754713 CCTTCTTCACTCACGTGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 11754772 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||||| ||||| ||||| || | |||||| ||| | |||||||||| |||||| Sbjct 11754773 CTGCTGCCCCCCGTGGGAGTTCGGGCAGTGTCTAAGTCCTAGTGTGGCTGATCATCCGAA 11754832 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCC 179 |||| ||||| | ||| | | || ||| ||| |||||| Sbjct 11754833 AAGACTAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCC 11754872 >seq12 Length=23561512 Score = 172 bits (190), Expect = 1e-40 Identities = 143/175 (82%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||||||| |||||| || |||| ||| ||||| |||||||||| ||| |||||||| Sbjct 17367848 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 17367907 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||||| ||||| |||||| || |||||||||||| |||||||||||| |||||| Sbjct 17367908 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 17367967 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 |||||||||| | ||| | | || ||| ||| |||||| ||||||| ||||| Sbjct 17367968 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCCGACCAACTACCTAAT 17368022 Score = 127 bits (140), Expect = 5e-27 Identities = 111/137 (81%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 53 CTTG-CGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTC 111 |||| |||||||||| ||| |||||||||||||||| ||||| |||||| || |||||| Sbjct 17251503 CTTGTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTG 17251444 Query 112 TCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGC 171 ||||| |||||||||||| ||||| |||||||||| | ||| | | || ||| || Sbjct 17251443 TCAGTCCCAGTGTGGCTGATCATCGGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGC 17251384 Query 172 CATTACCCCGCCAACTA 188 | |||||| ||||||| Sbjct 17251383 CTTTACCCGACCAACTA 17251367 >seq3 Length=34446443 Score = 150 bits (166), Expect = 4e-34 Identities = 139/175 (79%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||||||| |||||| || |||| ||| ||||| |||||||||| ||| |||||||| Sbjct 22408230 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 22408171 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||||| ||| | ||||| || || ||||||||| |||||||| ||| |||||| Sbjct 22408170 CTGCTGCC-CCCCTGAGAGTCCGGGCCATGTCTCAGTCCCAGTGTGACTGATCATCCAAA 22408112 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 |||||||||| | ||| | | || ||| ||| |||||| ||||||| ||||| Sbjct 22408111 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCCGACCAACTACCTAAT 22408057 >seq5 Length=26652778 Score = 116 bits (128), Expect = 9e-24 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34 GCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGT 93 ||||||| ||| |||||||||| | | ||||| | || ||| ||||||||| | |||||| Sbjct 4307610 GCGGCATTGCTCCATCAGGCTTTCTCTCATTGCGGAAAATTTCCCACTGCTACTTCCCGT 4307551 Query 94 AGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGG 153 |||||||||| ||||| ||||| |||||| |||| || |||||| ||||| ||| | Sbjct 4307550 AGGAGTCTGGGTCGTGTTTCAGTCTCAGTGTAGCTGATCGTCCTCTTAGACCGACTACTG 4307491 Query 154 ATCGTCGCCTAGGT 167 ||| | || | ||| Sbjct 4307490 ATCATTGCTTTGGT 4307477 Score = 98.7 bits (108), Expect = 2e-18 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107 |||||||| ||||||||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 16758279 TCAGGCTTTCGCCCATTGCGGAAAATTCTCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 16758220 Query 108 TGTCTCAGT 116 ||||||||| Sbjct 16758219 TGTCTCAGT 16758211 >seq11 Length=27785585 Score = 75.2 bits (82), Expect = 3e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 100 CTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 |||| |||||||||||| |||||||||||| |||||||||| ||||||||| Sbjct 20541919 CTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTA 20541969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222353328768