Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq2 302 1e-79 seq3 203 1e-49 seq7 185 3e-44 seq12 149 2e-33 seq5 111 5e-22 >seq2 Length=33962743 Score = 302 bits (334), Expect = 1e-79 Identities = 274/343 (80%), Gaps = 3/343 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||||| |||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 723584 CGCGTTTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 723525 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||| || Sbjct 723524 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGTAG 723465 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 || |||||||| || | ||||||| ||||||||| ||||| || ||||| | || Sbjct 723464 CAATGGGGAATTTTCCGCAATGGGAGAAAGCCTGACAGAGCAATGCTGCGTGGAGGTGGA 723405 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGG 397 ||||| |||||||| || ||| | ||| |||| | |||||||||| |||||| Sbjct 723404 AGGCCCACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAAT 723345 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 723344 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 723285 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || | ||||| Sbjct 723284 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 723243 >seq3 Length=34446443 Score = 203 bits (224), Expect = 1e-49 Identities = 243/324 (75%), Gaps = 7/324 (2%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| ||||| |||| |||||| | | ||| |||| | || || Sbjct 22408057 ATTAGGTAGTTGGTCGGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTTGG 22408116 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| | |||| ||| ||||||||| || || |||| | ||| ||||||||||||| Sbjct 22408117 ATGATCAGTCACACTGGGACTGAGACATGGCCCGGACTCTCAGGGG-GGCAGCAGTGGGG 22408175 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 22408176 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 22408235 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | |||||||||| || || | | ||| ||||| ||| ||||| ||||||| Sbjct 22408236 GCCACTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAAGACTCGAGGAAGAAGCCC 22408295 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAA-TACGTAGGGGGCTAGCGTTATCCGGAATT 462 ||||||||| |||||||||||||||||||| | | |||||| || ||| | ||||| Sbjct 22408296 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGGAAGGGGGGGGCAAGTGTTCTTTGGAATG 22408355 Query 463 ACTGGGGCGTAAAGGGTGCGTAGG 486 ||| | |||||||| |||||| Sbjct 22408356 ACT-AGTTGTAAAGGGCACGTAGG 22408378 >seq7 Length=26200591 Score = 185 bits (204), Expect = 3e-44 Identities = 164/206 (80%), Gaps = 8/206 (4%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| ||| |||||| | Sbjct 18931053 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATTAGTAGCTGGT 18931112 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| ||||| |||| | ||| ||||||||||||| ||| Sbjct 18931113 CCGAGAGGATGATCAGCCACACTGGGACTGATACACAGCCCAGACTCCTACGGGAGACAG 18931172 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG-------- 331 ||||||||||| || | |||||||| ||||||||| || || |||||||| Sbjct 18931173 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACAGAGTAATGCCGCGTGGAGGTGGA 18931232 Query 332 AGCGATGAAGGCCTTCGGGTCGTAAA 357 ||| ||||||| |||||||| || Sbjct 18931233 AGCCTGGAAGGCCCACGGGTCGTCAA 18931258 Score = 147 bits (162), Expect = 7e-33 Identities = 180/244 (74%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 184 GGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTG 243 ||||| |||| |||||| | | ||| |||| || || ||||| |||||| | Sbjct 11754871 GGTAAAGGCTGACCAAGCCAATGATGCTTAGCTAGTCTTTTCGGATGATCAGCCACACTA 11754812 Query 244 GAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGG 303 | ||| |||||| | || |||||| ||||| |||||||||||||||| ||| |||||||| Sbjct 11754811 GGACTTAGACACTGCCCGAACTCCCACGGGGGGCAGCAGTGGGGAATCTTGGACAATGGG 11754752 Query 304 CAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--TTCGGGTCGTAAAGCTC 361 | |||||| ||| |||||| | |||||| || ||||| | | | | ||||||||| Sbjct 11754751 CGAAAGCCCGATCCAGCAATATCACGTGAGTGAAGAAGGGCAATGCCACTTGTAAAGCTC 11754692 Query 362 TGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCC 419 | || | | | ||| ||||| ||| ||||| |||||| ||||||||| ||||| Sbjct 11754691 TTTCTCCGAGTGCGCGATCATGACATGACTCGAGGAAGAAGCCTCGGCTAACTCCGTGCT 11754632 Query 420 AGCA 423 |||| Sbjct 11754631 AGCA 11754628 >seq12 Length=23561512 Score = 149 bits (164), Expect = 2e-33 Identities = 138/175 (79%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| ||||| |||| |||||| | | ||| |||| | || || Sbjct 17368022 ATTAGGTAGTTGGTCGGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 17367963 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 17367962 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 17367903 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| Sbjct 17367902 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGG 17367848 Score = 123 bits (136), Expect = 7e-26 Identities = 145/192 (76%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 306 AAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--TTCGGGTCGTAAAGCTCTG 363 || ||| ||| |||||| |||||||| || ||||| | | | | | |||||||||| Sbjct 11407626 AATGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCTT 11407685 Query 364 TCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAG 421 | || || | || ||||| | ||| ||||| |||||||||||||||| ||||||| Sbjct 11407686 TTGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAA 11407745 Query 422 CAGCCGCGGTAATAC---GTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGG 478 |||||||||||| || | |||||| || ||| | |||||| ||| ||||||||||| Sbjct 11407746 CAGCCGCGGTAAGACCGGGGGGGGGGCAAGTGTTCTTCGGAATGACT-AGGCGTAAAGGG 11407804 Query 479 TGCGTAGGTGGT 490 |||||| ||| Sbjct 11407805 CACGTAGGCGGT 11407816 Score = 122 bits (134), Expect = 3e-25 Identities = 122/156 (78%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 347 CGGGTCGTAAAGCTCTGTCCTCAAGGAAGATA--ATGACGGTACTTGAGGAGGAAGCCCC 404 |||||||| || ||| | ||| ||||| | ||||||||| |||||| |||| | Sbjct 15985166 CGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAATAAGCATC 15985225 Query 405 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 464 |||||||| ||||||||||||||||||| || ||| || ||||||||||||||| | Sbjct 15985226 GGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGAATGA- 15985284 Query 465 TGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | |||||||||| || |||||||| || | ||||| Sbjct 15985285 TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 15985320 Score = 104 bits (114), Expect = 7e-20 Identities = 96/120 (80%), Gaps = 5/120 (4%) Strand=Plus/Minus Query 375 GATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAAT 434 ||| ||||| | ||| ||||| |||||||||||||||| |||||||||||||||||||| Sbjct 17367386 GATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAG 17367327 Query 435 A----CGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 | | |||||| || ||| | |||||| ||| ||||||||||| |||||| ||| Sbjct 17367326 ATGGGAGGGGGGGGCAAGTGTTCTTCGGAATGACT-AGGCGTAAAGGGCACGTAGGCGGT 17367268 Score = 102 bits (112), Expect = 2e-19 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 174 TAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATC 233 |||||||| ||||| |||| |||||| | | ||| |||| | || | ||||| Sbjct 17251367 TAGTTGGTCGGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCCGATGATC 17251426 Query 234 GGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATT 293 |||||| ||| ||||| |||||| || ||||| ||||| |||||||||||||||| || Sbjct 17251427 AGCCACACTGGGACTGACACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGGAATCTT 17251486 Query 294 GCACAATGGGC 304 | ||||||||| Sbjct 17251487 GGACAATGGGC 17251497 >seq5 Length=26652778 Score = 111 bits (122), Expect = 5e-22 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 195 ACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACA 254 ||||| || | ||||||||| || || ||||| |||| || ||| || ||||| ||| Sbjct 4307477 ACCAAAGCAATGATCAGTAGTCGGTCTAAGAGGACGATCAGCTACACTGAGACTGAAACA 4307536 Query 255 CGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGA 314 || ||| |||||||||||| | ||||||||| ||| || | ||||| | ||||||||| Sbjct 4307537 CGACCCAGACTCCTACGGGAAGTAGCAGTGGGAAATTTTCCGCAATGAGAGAAAGCCTGA 4307596 Query 315 TGCAGCAACGCCGC 328 || ||||| ||||| Sbjct 4307597 TGGAGCAATGCCGC 4307610 Score = 93.3 bits (102), Expect = 1e-16 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 246 ACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCA 305 |||||||||||| ||| ||||||||||||||||||||||| |||| || | |||||||| Sbjct 16758211 ACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGAGAATTTTCCGCAATGGGCG 16758270 Query 306 AAAGCCTGA 314 ||||||||| Sbjct 16758271 AAAGCCTGA 16758279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497542821632