Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq2 203 8e-50 seq12 192 1e-46 seq3 136 1e-29 >seq2 Length=33962743 Score = 203 bits (224), Expect = 8e-50 Identities = 256/349 (73%), Gaps = 2/349 (1%) Strand=Plus/Minus Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 ||| |||||||||||| | | ||||||||| || |||||||| || | ||||| | || Sbjct 723180 TAGTGTTATCCGGAATGATTAGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGT 723121 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 ||| | | |||||||||| || || | |||||| | ||| |||| | | ||| Sbjct 723120 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 723061 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 |||| |||||| | ||| ||||||||||||| | || || | | |||||||| || Sbjct 723060 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGG 723001 Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300 |||| || |||||| | | |||||||||||| ||||||| |||||||||| | Sbjct 723000 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGG 722941 Query 301 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCG-CATA 359 ||||||| |||| ||||||| |||||||||||| |||||||||| | | ||| | Sbjct 722940 GATTAGAGACCCCAGTAGTCCTAGCCGTAAACGATAGATACTAGGTG-CTGTGCGACTCG 722882 Query 360 AGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 722881 ACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 722833 Score = 120 bits (132), Expect = 7e-25 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 723352 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 723293 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 723292 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 723233 Query 125 GGCTATGGCTCAACCCCGG 143 | | |||||||||| || Sbjct 723232 TCCCAGGGCTCAACCCTGG 723214 >seq12 Length=23561512 Score = 192 bits (212), Expect = 1e-46 Identities = 222/299 (74%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 15985211 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 15985270 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 15985271 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 15985330 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 15985331 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 15985390 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| ||||||||||||| | || || || | |||||||| || ||| Sbjct 15985391 GAGGGAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCAGAAAGAACACCAACGGTGAA 15985450 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGAT 303 || |||||| | | ||||||| |||| ||||||| |||||||||| |||| Sbjct 15985451 AGCACTCTGCTGGGCCGATACTGACATTGAGAGACGAAAGCTAGGGGAGCAAATGGGAT 15985509 Score = 122 bits (134), Expect = 2e-25 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 198 GTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGG 257 |||||| |||||||| ||||||| | | |||||| ||| |||||||| ||| |||| Sbjct 17367039 GTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGG 17366980 Query 258 ACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTA 317 || ||| ||| || |||||| |||||||| |||| ||||||||||||||||| Sbjct 17366979 GTCCCTACCGACGCTGGGGTGTGAAAGCATGGGGAGCGAACAAGATTAGATACCCTGGTA 17366920 Query 318 GTCCACGCCGTAAACGATGA 337 ||||| |||||||||||||| Sbjct 17366919 GTCCATGCCGTAAACGATGA 17366900 Score = 111 bits (122), Expect = 4e-22 Identities = 170/239 (71%), Gaps = 14/239 (6%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATA----CGTAGGG 57 ||| ||||| |||||||||||||||| |||||||||||||||||||| | | ||| Sbjct 17367374 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGATGGGAGGGGGG 17367315 Query 58 GGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGA 117 ||| || ||| | |||||| ||| ||||||||||| |||||| ||| | || | Sbjct 17367314 GGCAAGTGTTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAA 17367255 Query 118 GGTGAAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTG 173 ||||||| | | || | ||| |||| ||||||| | || || ||||| Sbjct 17367254 AGTGAAAGTC---ACCAAAAAGTGGCGGAATGCTCTTGAAACCAATTCA---CTTGAGTG 17367201 Query 174 CAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAAC 232 || || ||||||||| | |||||| |||||||| ||||||| | | |||||| Sbjct 17367200 AGACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAAC 17367142 Score = 104 bits (114), Expect = 6e-20 Identities = 87/106 (82%), Gaps = 3/106 (3%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC---GTAGGGG 58 ||| ||||| |||||||||||||||| ||||||| |||||||||||| || | |||| Sbjct 11407711 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAACAGCCGCGGTAAGACCGGGGGGGGG 11407770 Query 59 GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGT 104 || || ||| | |||||| ||| ||||||||||| |||||| ||| Sbjct 11407771 GCAAGTGTTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGT 11407816 Score = 82.4 bits (90), Expect = 2e-13 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 252 TGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACC 311 |||||| | | |||||||||||| ||||||| |||||||||| |||||||| ||| Sbjct 5512653 TGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACC 5512594 Query 312 CTGGTAGTCCACGCCGTAAACGATG 336 | ||||||| ||||||||||||| Sbjct 5512593 CCAGTAGTCCTAGCCGTAAACGATG 5512569 >seq3 Length=34446443 Score = 136 bits (150), Expect = 1e-29 Identities = 122/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 ||||||||| | |||||| |||||||| ||||||| | | |||||| ||| ||||| Sbjct 22408581 AGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTATGAAGGAACGCCAAAAGCGAA 22408640 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 | | ||| |||| | || ||| ||| || ||||||| ||||||||||||| |||| Sbjct 22408641 GACAGCTCTCTGGGTCCTTACCGACGCTGGGGTGCGAAAGCATGGGGAGCAAACACGATT 22408700 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||||||||||||||| |||||||| ||||| Sbjct 22408701 AGATACCCTGGTAGTCCATGCCGTAAATGATGA 22408733 Score = 91.5 bits (100), Expect = 4e-16 Identities = 81/100 (81%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAA-TACGTAGGGGGC 60 ||| ||||| |||||||||||||||| |||||||||||||||||||| | | |||||| Sbjct 22408279 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGGAAGGGGGGGGC 22408338 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGG 100 || ||| | ||||| ||| | |||||||| |||||| Sbjct 22408339 AAGTGTTCTTTGGAATGACTAGTTGTAAAGGGCACGTAGG 22408378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203154061824