Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05]
3,818 sequences; 339,177,042 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq2 260 3e-67
seq1528 150 3e-34
>seq2
Length=33962743
Score = 260 bits (288), Expect = 3e-67
Identities = 182/207 (88%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 122 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACG 181
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 26802159 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATCCAACG 26802218
Query 182 AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241
||| || ||||||||| ||| | ||||||||||| ||| | ||||| |||||||
Sbjct 26802219 AGTATATAGCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGAT 26802278
Query 242 AGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCAC 301
||| |||||||||| ||| ||||||||||||||||||||||||||||| ||||||||| |
Sbjct 26802279 AGATCATTGCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTC 26802338
Query 302 GCGTTGATTACGTCCCTGCCCTTTGTA 328
||||||| |||||||||||||||||||
Sbjct 26802339 GCGTTGACTACGTCCCTGCCCTTTGTA 26802365
>seq1528
Length=141
Score = 150 bits (166), Expect = 3e-34
Identities = 103/115 (90%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||||||||||||| | | | || | | |||||||||||||||||||||||||||
Sbjct 27 GCTTCTTAGAGGGACTATGGCCGTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 86
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184
||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 87 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATCCAACGAGT 141
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947163835904
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |