Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq10 168 2e-39 seq8 163 1e-37 seq12 150 6e-34 seq5 107 6e-21 seq7 86.0 2e-14 seq1 80.6 9e-13 seq3 77.0 1e-11 >seq10 Length=20731201 Score = 168 bits (186), Expect = 2e-39 Identities = 319/462 (69%), Gaps = 27/462 (6%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| || || | || ||||| ||| |||| Sbjct 2489343 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGCAGAGAGCTCTAACAGGCCTTGGA 2489284 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 2489283 GGACCGAACCCACATATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 2489224 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||| || || || ||||| |||||| |||| || | | || Sbjct 2489223 AACCAAGATCGGATATAGTTGTTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 2489166 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG----TCATTGCGACTTACCAAA 266 | || | | ||||||||||| |||||||| | |||| || ||| ||| Sbjct 2489165 TCGATTGCCTGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCTTTAGCAAC 2489106 Query 267 CCATTGCAAACTCCGAATGC------GCATCAGTTTTACCGCGGGAGTGAGGGCATGGGT 320 || | ||||||||||| | |||| | ||| | || | | ||||| Sbjct 2489105 CCCAGGGAAACTCCGAATACAGGCCGTCATCCTTAGTACAGACAGACTAA----TTGGGT 2489050 Query 321 GCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGAC 380 |||||| |||| ||||||| || | || || || ||||||| ||| || | Sbjct 2489049 GCTAAGATCCGAAGTCGAGAGGGAAATAGCCCAGATCATACGCTAAGGTCCCTAAGCAAT 2488990 Query 381 AGCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAG 438 || ||| || || |||| |||| || | |||| | |||| || |||||||||| Sbjct 2488989 CACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAG 2488934 Query 439 CAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||| || ||| |||| |||||| |||||||| ||| || Sbjct 2488933 CAGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 2488893 >seq8 Length=25958679 Score = 163 bits (180), Expect = 1e-37 Identities = 379/562 (67%), Gaps = 36/562 (6%) Strand=Plus/Minus Query 22 GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTA 81 ||| ||| | | |||||||| | |||||||| ||||| ||||||||||| | | | Sbjct 15248411 GTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGATG 15248352 Query 82 ACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAG 141 | || |||||||||||| ||| |||||||| ||| || ||||||| ||||| ||| Sbjct 15248351 AAACTAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAG 15248292 Query 142 GGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGT 201 |||||||| || | ||| || |||||||||||| |||||| || ||| | Sbjct 15248291 GGGTGAAATGCCACTTGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCACA 15248232 Query 202 GCCTCAAGTATCAC----CATCG-GGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCG 256 || ||| | || |||| |||||| ||||||||| || ||| || | | Sbjct 15248231 GC----AGT-TGACTAGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCTGCAC-GAG 15248178 Query 257 ACTTACCAAACCATTGCAAACTCCGAATGCGC---AT----CAGTTTTACCGCGGG---- 305 ||||||| | |||||||| |||| | || || || | ||| Sbjct 15248177 CGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGACCCAAAAATAACAGGGGTCAA 15248118 Query 306 --------AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 |||||| ||||| | |||| | | | ||||||| || | ||||| Sbjct 15248117 GGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATC 15248058 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 | ||||||||||||| ||||||| ||| ||| | | || || || | ||| |||||| Sbjct 15248057 ACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTGGGGGTGCAAAGACA 15248000 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 || |||| ||| || | |||||||||| | |||||||||||||||| |||||||| || Sbjct 15247999 GCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTTAAAGAGTGCGTAATAGCTCACTGATC 15247941 Query 478 GAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCAT 537 || | || || || | |||| |||| ||| ||||||| ||||||| | Sbjct 15247940 AAGCGCCCTTGCACTGAAGATGAACGGG-GCTAAGCGATCTGCCGAAGCTGTGGGAT-GT 15247883 Query 538 TTATATG-ATCGGTAGGGGAGC 558 | ||| |||||||||||||| Sbjct 15247882 CAAAATGCATCGGTAGGGGAGC 15247861 >seq12 Length=23561512 Score = 150 bits (166), Expect = 6e-34 Identities = 291/423 (69%), Gaps = 26/423 (6%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 18042006 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 18042065 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 18042066 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 18042125 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || ||||| |||||| |||| || | | || Sbjct 18042126 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 18042183 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG----TCATTGCGACTTACCAAA 266 | || | | ||||||||||| |||||||| | |||| || ||||||| Sbjct 18042184 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCTTTACCAAC 18042243 Query 267 CCATTGCAAACTCCGAATGC------GCATCAGTTTTACCGCGGGAGTGAGGGCATGGGT 320 || | ||||||||||| | |||| | ||| | || ||| ||||| Sbjct 18042244 CCCAGGGAAACTCCGAATACAGGCCGTCATCCTTAGTACAGACAGACTGA----TTGGGT 18042299 Query 321 GCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGAC 380 |||||| ||| ||||||| || | || || | ||||||| ||| || | Sbjct 18042300 GCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAAT 18042359 Query 381 AGCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAG 438 || ||| || || |||| |||| || | |||| | |||| || |||||||||| Sbjct 18042360 CACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAG 18042415 Query 439 CAG 441 ||| Sbjct 18042416 CAG 18042418 >seq5 Length=26652778 Score = 107 bits (118), Expect = 6e-21 Identities = 130/175 (74%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| || | | ||| | |||||| Sbjct 11044435 AGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCTGGATCACCAGCTA 11044376 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| ||||||| ||| ||| | | || || || | ||| |||||||| |||| Sbjct 11044375 AGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTGGGGGTGCAAAGACAGCCAGGAG 11044318 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||| || | |||||||||| | |||||||||||||||| |||||||| ||||| Sbjct 11044317 GTTTGCCTAGAAGCAGCCA-CCCTTTAAAGAGTGCGTAATAGCTCACTGATCGAG 11044264 >seq7 Length=26200591 Score = 86.0 bits (94), Expect = 2e-14 Identities = 120/166 (72%), Gaps = 3/166 (2%) Strand=Plus/Plus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| || || ||||| | |||||| Sbjct 16570702 AGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAACCCGGATCACCAGCTA 16570761 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| ||||||| ||| | | | | || || || | ||| || | ||| |||| Sbjct 16570762 AGGCCCCTAAATGACCGCTCATTGATA--AAGGAGGTGGGGGTGCAAAAATAGCCAGGAG 16570819 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCA 471 ||| || | |||||||||| | |||||||||||||| | | |||| Sbjct 16570820 GTTTGCCTAGAAGCAGCCA-CCCTTTAAAGAGTGCGTTATATCTCA 16570864 >seq1 Length=39866532 Score = 80.6 bits (88), Expect = 9e-13 Identities = 106/145 (73%), Gaps = 8/145 (6%) Strand=Plus/Plus Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 ||||||| || | | ||| | ||||||||||||| ||||||| ||| ||| | | | Sbjct 483193 CGAGAGGGAAACAGCCTGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--A 483250 Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455 | || || | ||| ||||| ||| ||| || | ||||||||| | ||||||| Sbjct 483251 AGGAGGTGGGGGTGCAAAGAC-----GGAGGTTTGCCTAAAAGCAGCCACCC-TTTAAAG 483304 Query 456 AGTGCGTAACAGCTCACTAGTCGAG 480 ||||||||| |||||||| ||||| Sbjct 483305 AGTGCGTAATAGCTCACTGATCGAG 483329 >seq3 Length=34446443 Score = 77.0 bits (84), Expect = 1e-11 Identities = 107/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 415 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 474 ||| | |||| ||| || | |||||||||| | |||||||||||||||| |||||||| Sbjct 26095743 ACAACCAGGAGGTTTGCCTAGAAGCAGCCACCC-TTTAAAGAGTGCGTAATAGCTCACTG 26095685 Query 475 GTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT 534 ||||| | ||| || || | |||| |||| ||| ||||||| ||||||| Sbjct 26095684 ATCGAGCGCCCTTGCGCTGAAGATGAACGGG-GCTAAGCGATCTGCCGAAGCTGTGGGAT 26095626 Query 535 CATTTATATG-ATCGGTAGGGGAGC 558 | | ||| |||||||||||||| Sbjct 26095625 -GTCAAAATGCATCGGTAGGGGAGC 26095602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689535491072