Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq8 107 4e-21 seq5 96.9 6e-18 >seq8 Length=25958679 Score = 107 bits (118), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 10/197 (5%) Strand=Plus/Minus Query 56 CGATAAGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAAC 115 ||| | ||| ||||||| | ||| | | | |||||| ||||| || ||| || ||| Sbjct 15249021 CGAAATGCTTTGGGGAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAAC 15248963 Query 116 CCGGCCCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAAC 174 | |||| | ||| |||||||| ||| | | |||| || ||| ||||||| Sbjct 15248962 CT-----TTTGA---ACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAAC 15248911 Query 175 TGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAG 234 |||||||||| |||||| ||||||||||| ||| | ||||||| ||||| |||||| Sbjct 15248910 TGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAG 15248851 Query 235 CGAAATGGGATGAGCCT 251 | |||||||| |||||| Sbjct 15248850 CAAAATGGGAGGAGCCT 15248834 >seq5 Length=26652778 Score = 96.9 bits (106), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 10/206 (5%) Strand=Plus/Minus Query 35 GATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGAGTGAGCAAACACACTTTGATCCG 94 || ||||| ||||| | ||| | ||| |||||||| | || | | | |||||| Sbjct 11044870 GAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTT-GAAATTAAGCATAGATCCG 11044812 Query 95 CAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACATAGGTAT 154 ||||| || ||| || |||| |||| | ||| |||||||| ||| | | Sbjct 11044811 GAGATTCCCAAATAGGTCAACCT-----TTTGA---ACTGCCTGCTGAATCCATGAGCAG 11044760 Query 155 GCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGA 213 |||| || ||| ||||||||||||||||| |||||| ||||||||||| ||| | Sbjct 11044759 GCAATAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGC 11044700 Query 214 GATTCCCAAAGTAGTGGCGAGCGAAA 239 ||||||| ||||| ||||||||||| Sbjct 11044699 GATTCCCGTAGTAGCGGCGAGCGAAA 11044674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918364935488