Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq9 464 2e-128 seq4 347 4e-93 seq6 136 1e-29 seq2 122 3e-25 seq1 78.8 3e-12 >seq9 Length=20482102 Score = 464 bits (514), Expect = 2e-128 Identities = 262/265 (99%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 271 CAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCC 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 CAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCC 663 Query 331 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATC 390 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 662 CGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATC 603 Query 391 CATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGT 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 602 CATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGT 543 Query 451 TACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGG 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 542 TACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGG 483 Query 511 GCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||| |||| Sbjct 482 GCAGAAATCACATTGCGTCAGCATC 458 Score = 116 bits (128), Expect = 1e-23 Identities = 66/67 (99%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 469 GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2257 GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 2198 Query 529 CAACATC 535 || |||| Sbjct 2197 CAGCATC 2191 >seq4 Length=30521686 Score = 347 bits (384), Expect = 4e-93 Identities = 251/298 (84%), Gaps = 28/298 (9%) Strand=Plus/Minus Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13983085 GCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 13983026 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 |||||||||||||| ||||||||||||||||||||| || ||| ||||||||||||| Sbjct 13983025 ACAGGGTCTTCTTTTCCCGCTGATTCCGCCAAGCCCATTATCTTCGCTGTGGTTTCGCGG 13982966 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 ||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 13982965 GATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGGGCGTCATTAATT---- 13982910 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 || ||||||||||||||||||| |||||||| |||| Sbjct 13982909 ------------------------AGTGTCATAGTTACTCCCGCCGGTTACCCGCACTTG 13982874 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| || Sbjct 13982873 GTTGAATTTCTTCACTTTGACATTCAGAGATCTGGGCATAAATTACATTGCGTCAGCA 13982816 Score = 114 bits (126), Expect = 4e-23 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| || ||| |||||||||||| || |||| | ||||| |||||||||||| Sbjct 13983204 CTTTTATTCCACACGAGATTTCTGTTTTCGTTGAGCTCATCTTAGCGCACCTGCGTTATC 13983145 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCG 122 |||||||||| ||||||||| ||||||||||| ||||||||||||| || |||| Sbjct 13983144 TTTTAACAGATATGCCGCCCCTGCCAAACTCCCTACCTGACAATGTCTTCCGCCCG 13983089 >seq6 Length=27870862 Score = 136 bits (150), Expect = 1e-29 Identities = 188/256 (73%), Gaps = 14/256 (5%) Strand=Plus/Minus Query 286 GTCAAGCTCAACAGGGTC-TTCTTTCCCCGCTGATTCCGCCAAGCCCG---TTCCCTTGG 341 || || || || |||||| |||||||| ||||||||||| |||| | | || | | | Sbjct 6298095 GTTAACCTTAATAGGGTCATTCTTTCCTCGCTGATTCCGTCAAGGCGGCTATTTCTTCCG 6298036 Query 342 CTGT-GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 | || ||||||| ||||||||| || |||| || || ||| ||||||| |||||| || Sbjct 6298035 CCGTTGGTTTCGTTAGATAGTAATCAGTGACAATGAGAGTCTTGTTAATCTATTCATACG 6297976 Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA-AGAGAGTC-ATAGTTACTCCCG 458 ||||| |||||||| | || |||||| || |||| | | || ||||||||||| | Sbjct 6297975 TGTCACAAATTAGATAA---GGTATTTGGTTATCTTATAAATCGTTTATAGTTACTCCTG 6297919 Query 459 CCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 518 |||||||| | || || | ||||| |||| ||| ||| | ||| || || |||| Sbjct 6297918 CCGTTTACGCACGGTTCATCAAATTTATTCATTTTAACAGTTAGA----AGGACAAAAAT 6297863 Query 519 CACATTGCGTCAACAT 534 || |||| || | ||| Sbjct 6297862 CATATTGTGTTAGCAT 6297847 >seq2 Length=33962743 Score = 122 bits (134), Expect = 3e-25 Identities = 123/157 (78%), Gaps = 6/157 (4%) Strand=Plus/Plus Query 195 AAAAACGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACAC 254 || |||| ||| ||| || ||||||||||| | | | |||| ||||||||||||||| Sbjct 8729665 AATAACGTTAAAAGTAATGATATTTCACTTGTGA-GCGAGGGCTTCCACTTATTCTACAC 8729723 Query 255 CTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCG 314 ||||||| |||| | | ||||||| || |||||||||||| || |||||| || | Sbjct 8729724 CTCTCAAATCATCTTATGAAGTCGGTTTAAAGTCAAGCTCAA---AGTTTTCTTTTCCTG 8729780 Query 315 CTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 ||||||| | ||||||| |||| | ||||||||||| Sbjct 8729781 CTGATTCTGTCAAGCCCATTCC--TTGCTGTGGTTTC 8729815 >seq1 Length=39866532 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 30867269 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 30867328 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 30867329 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 30867374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635137568064