Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq1 159 1e-36 seq12 158 4e-36 seq4 141 3e-31 seq6 75.2 4e-11 >seq1 Length=39866532 Score = 159 bits (176), Expect = 1e-36 Identities = 192/265 (72%), Gaps = 16/265 (6%) Strand=Plus/Plus Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| |||| |||| | | ||||||| || | | ||||||||||| Sbjct 30867196 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 30867255 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 || | || |||||||| ||| ||||||||| |||||||||||||||| ||||| | Sbjct 30867256 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 30867315 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||| Sbjct 30867316 GACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTC 30867375 Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539 ||| || | ||||| | |||| |||||||||||||| Sbjct 30867376 CATTCAAAGCTTATCACACTTC----------------TCCTTCCGACCTTCCAGCACCG 30867419 Query 540 GGCAGGCGTCAGTCCGTATACCTCG 564 |||||| ||||| | ||||| ||| Sbjct 30867420 GGCAGGTGTCAGACTCTATACATCG 30867444 Score = 93.3 bits (102), Expect = 1e-16 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 444 |||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 12386994 TCGTTATGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 12386936 Score = 75.2 bits (82), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 5/146 (3%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || ||||| |||||| || ||| | | |||| ||||| | | || | | Sbjct 30870608 TCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCACGAGCAGAAT--C 30870665 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| | |||| ||||| | | |||||||||| ||| ||||| || ||||||||| Sbjct 30870666 AAC--GCTTGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAG 30870722 Query 121 TTAAACTACCCACCAGGCACTGTCCC 146 ||||||||||||| ||| |||||| Sbjct 30870723 ATAAACTACCCACCTCGCAGTGTCCC 30870748 >seq12 Length=23561512 Score = 158 bits (174), Expect = 4e-36 Identities = 340/491 (69%), Gaps = 22/491 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| || ||||| |||||||||||||||| ||| || ||||| | ||| || | Sbjct 5178033 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATGTC 5178091 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | | | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 5178092 CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCA 5178150 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGA---TCATGGGCCAAGGTTAGATAT 176 ||||| | ||| | |||||||| || | || || |||||||||| || Sbjct 5178151 TAGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGCGGGTC-TGACACAAGGTTAGA-AT 5178208 Query 177 CC-ACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGC 232 || | | ||||||||||| ||| | | ||| | | || || | |||| Sbjct 5178209 CCGAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAGGG-GGCCT- 5178266 Query 233 ATCATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAG 290 || | | || ||||||| || | || || || | || |||||| ||| | | || Sbjct 5178267 -TCTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAG 5178323 Query 291 TGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGC 349 | ||| | | |||||||| ||| | | | | ||||||| || | | Sbjct 5178324 TAAAGCTTCATAGGGTCTTTCTGTCTAGGTGTAGGTAGTCCGCATCTTCACAGACATGTC 5178383 Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTC 408 ||||||||| | || | ||||||| | || |||||||||| ||| ||| |||| Sbjct 5178384 TATTTCACCGAGTCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCATGCGGGTC 5178442 Query 409 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTT 468 |||||||||||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 5178443 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCATTATAGTTACGGCCGCCGTTC 5178502 Query 469 ACTGGGGCTTC 479 || |||||||| Sbjct 5178503 ACCGGGGCTTC 5178513 Score = 138 bits (152), Expect = 4e-30 Identities = 323/470 (69%), Gaps = 22/470 (5%) Strand=Plus/Plus Query 8 GTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGCCAACCAG 66 || ||||| |||||||||||||||| ||| || ||||| | ||| || || | | Sbjct 5178763 GTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATGTCCGTCTGG 5178821 Query 67 GCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAAC 126 | |||| |||||||| |||||||||||| |||||||||| | || |||||| |||| Sbjct 5178822 CCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCATAGAAAC 5178880 Query 127 TACCCACCAGGCACTGTCCCCAACCCAGA---TCATGGGCCAAGGTTAGATATCC-ACTA 182 | | ||| | |||||||| || | || || |||||||||| |||| | Sbjct 5178881 TGTCTACCTGAGACTGTCCCTTGGCCCGCGGGTC-TGACACAAGGTTAGA-ATCCGAGCT 5178938 Query 183 CGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCATCATAG 239 | ||||||||||| ||| | | ||| | | || || | |||| || | | Sbjct 5178939 CTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAGGG-GGCCT--TCTTCG 5178995 Query 240 TCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT 297 || ||||||| || | || || || | || |||||| ||| | | ||| ||| | Sbjct 5178996 CCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTAAAGCT 5179053 Query 298 CCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCA 356 | |||||||| ||| | || | | |||||| || | | |||||| Sbjct 5179054 TCATAGGGTCTTTCTGTCTAGGTGCAGGTAGTCCACATCTTCACAGACATGTCTATTTCA 5179113 Query 357 CCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTT 415 ||| | || | ||||||| | || ||||||| || ||||||| ||||||||||| Sbjct 5179114 CCGAGTCTCTCTCCGAGACAGT-GCCCAGATCGTTACACCTTTCGTGCGGGTCGGAACTT 5179172 Query 416 ACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCG 465 ||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 5179173 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGTCGCCG 5179222 >seq4 Length=30521686 Score = 141 bits (156), Expect = 3e-31 Identities = 136/175 (78%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 19653861 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 19653920 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGG 505 ||||||||||| |||||||| || |||||||| | || || | || || Sbjct 19653921 CGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTT------CCCTGTCA 19653974 Query 506 TGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | | |||| | ||| ||||||| |||| ||||||||||||| || |||| Sbjct 19653975 TCAGTTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 19654029 Score = 141 bits (156), Expect = 3e-31 Identities = 136/175 (78%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 19657564 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 19657623 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGG 505 ||||||||||| |||||||| || ||||||||| | | || | || || Sbjct 19657624 CGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCAGTCGTCGGCTT------CCCTGTCA 19657677 Query 506 TGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | | |||| | ||| ||||||| |||| ||||||||||||| || |||| Sbjct 19657678 TCAGTTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 19657732 >seq6 Length=27870862 Score = 75.2 bits (82), Expect = 4e-11 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 444 ||||||| | || ||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 16052082 TCGTTACATCTTTTGTGTGGGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 16052024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702335002368