Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05]
3,818 sequences; 339,177,042 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq2041 313 8e-83
seq9 242 1e-61
>seq2041
Length=230
Score = 313 bits (346), Expect = 8e-83
Identities = 204/223 (91%), Gaps = 1/223 (0%)
Strand=Plus/Plus
Query 54 ACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGT 113
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGT 60
Query 114 AGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATAC 173
|||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||
Sbjct 61 AGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCAC 120
Query 174 CATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATC 233
||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 121 CATGGTAGGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTC 180
Query 234 GCCGGCTC-AAGGCCATGCGATTCGTTAAGTTATTATGAATCA 275
|||||| | | |||| |||||| ||| |||||| ||||||||
Sbjct 181 GCCGGCACGAGGGCCGTGCGATCCGTCGAGTTATCATGAATCA 223
>seq9
Length=20482102
Score = 242 bits (268), Expect = 1e-61
Identities = 179/205 (87%), Gaps = 3/205 (1%)
Strand=Plus/Minus
Query 302 TTTTATCTAATAAATACACCCCTTCCG-AAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
||||||||||||||| | ||||| ||| |||||||||||| | ||| |||||||||||||
Sbjct 3809 TTTTATCTAATAAATGCGCCCCTCCCGGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAG 3750
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||| |||||||||| |||| | | ||| |||||| |||| ||||||||||||||||
Sbjct 3749 AATTACTACGGTTATCCGAGTAGCACG-TACCATCAAACAAACTATAACTGATTTAATGA 3691
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTT 479
||||||||||||||||| || ||| || |||||| ||||||||||||||||||||
Sbjct 3690 GCCATTCGCAGTTTCACAGTTCGAATTAGTTCATACTTGCACATGCATGGCTTAATCTTT 3631
Query 480 GAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||
Sbjct 3630 GAGACAAGCATATGACTACTGGCAG 3606
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510342332928
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |