Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2041 313 8e-83 seq9 242 1e-61 >seq2041 Length=230 Score = 313 bits (346), Expect = 8e-83 Identities = 204/223 (91%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 54 ACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGT 113 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGT 60 Query 114 AGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATAC 173 |||||||||||||||||||||||||||||||||||||||||| |||| |||||| || Sbjct 61 AGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCAC 120 Query 174 CATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATC 233 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || Sbjct 121 CATGGTAGGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTC 180 Query 234 GCCGGCTC-AAGGCCATGCGATTCGTTAAGTTATTATGAATCA 275 |||||| | | |||| |||||| ||| |||||| |||||||| Sbjct 181 GCCGGCACGAGGGCCGTGCGATCCGTCGAGTTATCATGAATCA 223 >seq9 Length=20482102 Score = 242 bits (268), Expect = 1e-61 Identities = 179/205 (87%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 302 TTTTATCTAATAAATACACCCCTTCCG-AAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||| | ||||| ||| |||||||||||| | ||| ||||||||||||| Sbjct 3809 TTTTATCTAATAAATGCGCCCCTCCCGGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAG 3750 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||| |||||||||| |||| | | ||| |||||| |||| |||||||||||||||| Sbjct 3749 AATTACTACGGTTATCCGAGTAGCACG-TACCATCAAACAAACTATAACTGATTTAATGA 3691 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTT 479 ||||||||||||||||| || ||| || |||||| |||||||||||||||||||| Sbjct 3690 GCCATTCGCAGTTTCACAGTTCGAATTAGTTCATACTTGCACATGCATGGCTTAATCTTT 3631 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| Sbjct 3630 GAGACAAGCATATGACTACTGGCAG 3606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510342332928