Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq7 131 9e-29 seq5 131 9e-29 seq9 120 2e-25 seq3 116 2e-24 seq4 113 3e-23 seq432 89.7 3e-16 seq733 75.2 6e-12 >seq7 Length=46770411 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| | |||||| || Sbjct 1034870 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCC 1034929 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 1034930 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 1034986 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| | |||||| || Sbjct 1921424 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCC 1921483 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 1921484 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 1921540 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| |||||| || Sbjct 4595643 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTGTAAGCAACATCCGCC 4595584 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 4595583 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 4595527 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| | |||||| || Sbjct 4652230 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCC 4652171 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| ||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 4652170 GATCCCTGCTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 4652114 Score = 122 bits (134), Expect = 5e-26 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||| ||||||||||||| | |||||||||| ||||| | |||||| || Sbjct 4692272 GAACCCAGAGACTTTGATTTCGCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCC 4692331 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 4692332 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 4692388 Score = 118 bits (130), Expect = 6e-25 Identities = 96/117 (82%), Gaps = 7/117 (6%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| | ||| || Sbjct 1067593 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAT-------ATCCGCC 1067645 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 1067646 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 1067702 Score = 113 bits (124), Expect = 3e-23 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||| ||||||||||| |||||||||| ||||| | |||||| || Sbjct 2919713 GAACCCAAAGATTTTGATTTCTCATAAGGTGCCGGTGGAGTCCTATAAGCAACATCCGCC 2919772 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| |||| | || |||||| |||| ||||||||||||||||| Sbjct 2919773 GATCCCTGGTCGGCATCCTTTATGATTGAGACTAGGACGATATCTGATCGTCTTCGA 2919829 Score = 111 bits (122), Expect = 9e-23 Identities = 97/118 (82%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 ||||||||||||||||||||||| ||||||||| |||| |||| | |||||| | Sbjct 25850302 GAACCCAAAGACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTATAAGCAACATCCGC 25850244 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| | |||||||| |||| ||| |||||| |||||||||| ||||||||||| Sbjct 25850243 CGATCCTTGGTCGGCATCATTTATAGTTGAGACTAGGACGGTATCTAATCGTCTTCGA 25850186 >seq5 Length=59822759 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| | |||||| || Sbjct 47011773 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCC 47011714 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 47011713 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 47011657 Score = 116 bits (128), Expect = 2e-24 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||| | || || | |||||| || Sbjct 46931370 GAACCCAAAGACTTTGATTTCTCATAAGGTGCTGGCGGAATCCTATAAGCAACATCCGCC 46931311 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| |||| |||| |||||| |||||||||||||||||||||| Sbjct 46931310 GATCCCTGGTCGGCATCATTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 46931254 >seq9 Length=72259479 Score = 120 bits (132), Expect = 2e-25 Identities = 98/118 (83%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| | |||||| || Sbjct 24699541 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCAGAGTCCTATAAGCAACATCTGCC 24699600 Query 61 GATCCCTAGTCGGCATAG-TTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| | |||| |||| |||||| | |||||||||||||||||||| Sbjct 24699601 GATCCCTGGTCGGCATCGTTTTATGGTTGAGACTAGGGCGGTATCTGATCGTCTTCGA 24699658 >seq3 Length=64463019 Score = 116 bits (128), Expect = 2e-24 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||| ||||||| ||||||||| |||||||||| ||| | | |||||| || Sbjct 19326781 GAACCTAAAGACTGTGATTTCTCATAAGGTGCCGGCGGAGCCCTATAAGCAACATCCGCC 19326840 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 19326841 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 19326897 Score = 95.1 bits (104), Expect = 7e-18 Identities = 90/117 (77%), Gaps = 10/117 (9%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| | |||||| || Sbjct 19327610 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGTGGAGTCCTATAAGCAACATCCGCC 19327551 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||| ||||||||||||||| Sbjct 19327550 GATCCCTGGTCGGCATCGTTTATGGTTGAGAC----------TCTGATCGTCTTCGA 19327504 >seq4 Length=49548238 Score = 113 bits (124), Expect = 3e-23 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| ||||| |||| ||||| | |||||| | Sbjct 45118951 GAACCCAAAGACTTTGATTTCTCATAAGGCGCCGGCGGAGTCCTATAAGCAACATCCGTC 45119010 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| ||| |||||| |||||||||||||| ||||||| Sbjct 45119011 GATCCCTGGTCGGCATCGTTTATGGTGGAGACTAGGACGGTATCTGATCATCTTCGA 45119067 >seq432 Length=13724 Score = 89.7 bits (98), Expect = 3e-16 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 |||||| ||||||||| |||||||| ||||| |||| |||||| ||||||||||||||| Sbjct 8297 AACATCCGCCGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCG 8238 Query 111 TCTTCGA 117 ||||||| Sbjct 8237 TCTTCGA 8231 >seq733 Length=9930 Score = 75.2 bits (82), Expect = 6e-12 Identities = 90/120 (75%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA--AAATGA-TAACATCG 57 ||||||||| |||||| |||| || ||| | || ||||||| |||| | | || | Sbjct 389 GAACCCAAAAACTTTGGTTTCCCGGAAGCTTCCATTCGAGTCATGAAATTAGTTACTCAG 448 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 449 AATGATCGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 508 Score = 75.2 bits (82), Expect = 6e-12 Identities = 90/120 (75%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA--AAATGA-TAACATCG 57 ||||||||| |||||| |||| || ||| | || ||||||| |||| | | || | Sbjct 9476 GAACCCAAAAACTTTGGTTTCCCGGAAGCTTCCATTCGAGTCATGAAATTAGTTACTCAG 9535 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 9536 AATGATCGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 9595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278378629320