Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq1 172 1e-40 seq2 122 2e-25 seq4 82.4 2e-13 >seq1 Length=61571842 Score = 172 bits (190), Expect = 1e-40 Identities = 238/333 (71%), Gaps = 0/333 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| |||||||||||| |||||| || ||| ||| Sbjct 35822494 TATCTGAGGAATAAGCATCGGCTAACTTTGTGCCAGCAGCCACGGTAAGACAGAGGATGC 35822553 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | ||| | | || Sbjct 35822554 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGT 35822613 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | | |||| | || Sbjct 35822614 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGTTGGAGTACGGTAGG 35822673 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| || ||||||||| | || || | ||||||||| || Sbjct 35822674 GGCAGAGGGAATTTCTGGTGGAGTGGTGAAATGCATTGAGATCGAAAAGAACACCAACGG 35822733 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 ||| ||| | |||| |||||||| || | |||||||| |||||||||| | Sbjct 35822734 TGAAAGCACTCTGCTGGACCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGG 35822793 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACG 335 ||||||| |||| ||||||| ||| |||||| Sbjct 35822794 GATTAGAGACCCCAGTAGTCCTAGCCGTAAACG 35822826 Score = 113 bits (124), Expect = 1e-22 Identities = 122/159 (77%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| |||||| || ||||||||| |||||||||||||| | || || ||| ||| Sbjct 8290897 TATCTGAGGAATAACCATCGGCTAACTCTGTGCCAGCAGCCGCAGCAAGACAGAGGATGC 8290956 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| || ||| || | | ||| | | || Sbjct 8290957 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTACGTAGGTGGCTTTTCAAGTCCGCCGT 8291016 Query 123 GAAATCCCCGGGCTTAAC-CTGGGAAT-TGCATTTGTGA 159 |||| || ||||| ||| |||| || ||||||||| Sbjct 8291017 CAAATTCCAGGGCTCAACACTGGCCATCAACATTTGTGA 8291055 Score = 104 bits (114), Expect = 6e-20 Identities = 227/337 (67%), Gaps = 6/337 (2%) Strand=Plus/Minus Query 4 ACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCA 63 |||||| ||||||||| | ||||||| ||||||||||||| |||| | |||||||| Sbjct 43626874 ACCTGAGGAATAAGCATCAGCTAACTCTGTGCCAGCAGCCGTTGTAAGATAGAGGGTGCA 43626815 Query 64 AGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTG 123 || |||| |||| | ||||||| |||| | | ||| || | | || | | | Sbjct 43626814 AGTGTTATCTTGAATGATTGGGCGTGAAGCATCTGTAGGTGGCTTTTCAAATCCGCCGAC 43626755 Query 124 AAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAG-A 182 ||||||| || || |||| || || | | ||| | || |||| ||| | Sbjct 43626754 AAATCCCAGGACTCAACCCTAGACAGGCGGTGGAAACTACCAAGCTGGAGT---ACAGTA 43626698 Query 183 GGGG--GGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAAT 240 |||| | | |||| | ||| ||| |||||||| | || || | | ||||||||| Sbjct 43626697 GGGGTAGAGGAAATTTCTGGTGGAGCGATGAAATGCATTGAGATTGGAAAGAACACCAAC 43626638 Query 241 GGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAAC 300 || ||| ||| | ||||| | |||| || || | | |||||| |||||| ||| Sbjct 43626637 GGTGAAAGCACTCTGCTGGGCTGACACCAACACTGAAAGATGAAAGCTAGGGGAGAAAAT 43626578 Query 301 AGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||| ||| |||||| || |||| ||| Sbjct 43626577 GGGATTAGAGTCCCCAATAGTCCTACCCGTAAATGAT 43626541 >seq2 Length=61504503 Score = 122 bits (134), Expect = 2e-25 Identities = 105/130 (81%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 208 GTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACAC 267 ||||||| ||||||| | | |||||| |||| ||||||||||| | ||||| || Sbjct 5325210 GTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTAC 5325269 Query 268 TGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGC 327 |||||| | ||||||| |||||||| ||||||||||||||||||||||||||| || Sbjct 5325270 CGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGC 5325329 Query 328 CCTAAACGAT 337 | |||||||| Sbjct 5325330 CGTAAACGAT 5325339 >seq4 Length=49548238 Score = 82.4 bits (90), Expect = 2e-13 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 17670148 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 17670207 Query 63 AAGCGTTA 70 |||||||| Sbjct 17670208 AAGCGTTA 17670215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289494407552