Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq2 100 4e-19 seq9 95.1 2e-17 seq4 77.0 5e-12 >seq2 Length=61504503 Score = 100 bits (110), Expect = 4e-19 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||| |||||||||||||||| ||||||| || |||| || | |||| | Sbjct 13177526 GGCACCCCTTCACCCGAAGTTACGGGGCTATTTTGCTGAGTTCCATAGAGAGAGTTGTCT 13177585 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 13177586 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 13177633 Score = 82.4 bits (90), Expect = 1e-13 Identities = 146/213 (69%), Gaps = 24/213 (11%) Strand=Plus/Plus Query 36 ATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCT 95 |||||| | ||||| | ||| |||| ||||||||||||| ||||| ||||| ||| | Sbjct 3109737 ATACATGGTCTTAC-GACTTTGCACAGACCTGTGTTTTTGGTAAATAGTCG--TCCGGGT 3109793 Query 96 ATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCC 155 | |||||||| || || | || | ||||||||||||||| Sbjct 3109794 ---CACTGCGACCCCCT----------------TTTGCGAG--GGGGCACCCCTTCTCCC 3109832 Query 156 GAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTAT 215 |||||| |||| ||||| |||| || |||| | |||| | || | ||| |||| Sbjct 3109833 AAAGTTATAGGGCTATTTTCCCGAGTTTCTTACAGAGAGTTGTCTCGTGCCCCTAGGTAT 3109892 Query 216 TCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | ||||||| ||||| ||||||||| |||| Sbjct 3109893 TTTCTACCTACCCACCCATGTCGGTTTCGGGTA 3109925 >seq9 Length=72259479 Score = 95.1 bits (104), Expect = 2e-17 Identities = 131/181 (72%), Gaps = 12/181 (7%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 22919045 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACC-ACTTAGCAGAGTCC 22919103 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||| ||| |||||||||||| || || | | ||| | || |||| | Sbjct 22919104 TGTGTTCTTAATAAACAGTCGCTACCTCCTGGTATGTGC--CGCTTTCCTAATCAAAAGA 22919161 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || ||||||||||||| |||||||| ||| ||||||||||| ||||| Sbjct 22919162 T--------AGGAG-AGCACCCCTTCTCCTGAAGTTACAGGGTCATTTTGCCGAGTTCCT 22919212 Query 186 T 186 | Sbjct 22919213 T 22919213 Score = 82.4 bits (90), Expect = 1e-13 Identities = 79/100 (79%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 150 TCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGA-ACGCC 208 |||||||||||||| ||| ||||||||||| ||| || || |||| | ||| | || Sbjct 22919529 TCTCCCGAAGTTACAGGGTCATTTTGCCGAGTTCTTTCGACATGGTTCTCTCGACGCACC 22919470 Query 209 TTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 |||||| |||||| || ||||||||||||||| |||| Sbjct 22919469 CTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTA 22919430 >seq4 Length=49548238 Score = 77.0 bits (84), Expect = 5e-12 Identities = 45/47 (96%), Gaps = 0/47 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 |||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 17667134 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 17667088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694344919324