Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq8 178 3e-42 seq7 145 2e-32 seq1 125 2e-26 seq9 86.0 2e-14 seq2 86.0 2e-14 >seq8 Length=47074253 Score = 178 bits (196), Expect = 3e-42 Identities = 131/153 (86%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 5859956 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 5860015 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5860016 ACGCCTTTCGTGTGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 5860075 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 | ||||||||||||||| | |||||||||| || Sbjct 5860076 TAGTTACGGCCGCCGTTCATCGGGGCTTCGGTC 5860108 Score = 100 bits (110), Expect = 7e-19 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 41820937 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 41820996 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTAC 119 | ||||| |||||| ||||||||| ||||| ||||||||||||||||||| Sbjct 41820997 GTTGTTACACCATTCATGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC 41821049 >seq7 Length=46770411 Score = 145 bits (160), Expect = 2e-32 Identities = 202/283 (71%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 ||||||| |||| || || ||||||| ||| ||| | || || ||| | ||| Sbjct 15000664 GCATCTTAACAGACATGTCTATTTCACCGAGCCTCTCTCTGCGATAGTGCCTAGACTGTT 15000723 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || || ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| Sbjct 15000724 ACACCTTTCGTGCAGGTTGGAACTTACCCGACAAGGAATTTTGCTACTTTAGGACCGTTA 15000783 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCC 188 | |||| ||||||| || ||| |||||||| || |||||| | | || | ||| Sbjct 15000784 TAGTTATGGCCGCCATTCACCAGGGCTTCGGTCGCCAGCTTCCCTATCATCAGTTCACCA 15000843 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGC-GTCACACCCTATACGTCCACTTTCGTGTT 247 | |||| ||||| |||| |||||||| || ||| | ||| | || Sbjct 15000844 ACTTCCTTAAACTTCCAGCACTGGGCAGGCTGT---------TACATGGTCTTATGACTT 15000894 Query 248 TGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGT 290 ||| || ||||||||| ||||||||||| || ||||| Sbjct 15000895 TGCGAAGACTTGTGTTTTTGGTAAACAGTCGCCCGGGGCTGGT 15000937 >seq1 Length=61571842 Score = 125 bits (138), Expect = 2e-26 Identities = 87/99 (88%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 || |||||||| ||||| | ||||||||||||||||| || ||||||||||||||||||| Sbjct 48278782 ATGGTTACGCCTTTCGTACGGGTCGGAACTTACCCGATAAAGAATTTCGCTACCTTAGGA 48278841 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 | ||||| ||||||||||| ||| |||||| ||||| || Sbjct 48278842 CTGTTATAGTTACGGCCGCTGTTCACCGGGTCTTCGGTC 48278880 >seq9 Length=72259479 Score = 86.0 bits (94), Expect = 2e-14 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 198 ACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGC 257 ||||||| |||||||||||| |||| || |||||| || || | || ||||||| | Sbjct 22919044 ACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCC 22919103 Query 258 TGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT 292 |||||| ||||||||||||||| | |||||||| Sbjct 22919104 TGTGTTCTTAATAAACAGTCGCTACCTCCTGGTAT 22919138 >seq2 Length=61504503 Score = 86.0 bits (94), Expect = 2e-14 Identities = 57/62 (92%), Gaps = 1/62 (2%) Strand=Plus/Plus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||||| | ||||||| |||||||||||||| ||||||||| ||||||||||||||| Sbjct 3109600 ATCGTTACGTCTTTCGTGCTGGTCGGAACTTACCTGACAAGGAA-TTCGCTACCTTAGGA 3109658 Query 127 CC 128 || Sbjct 3109659 CC 3109660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260696765696