Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10]
8,188 sequences; 553,845,420 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq8 178 3e-42
seq7 145 2e-32
seq1 125 2e-26
seq9 86.0 2e-14
seq2 86.0 2e-14
>seq8
Length=47074253
Score = 178 bits (196), Expect = 3e-42
Identities = 131/153 (86%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||||| || || ||||||| ||| ||| ||||||| ||| ||||||
Sbjct 5859956 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 5860015
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5860016 ACGCCTTTCGTGTGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 5860075
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165
| ||||||||||||||| | |||||||||| ||
Sbjct 5860076 TAGTTACGGCCGCCGTTCATCGGGGCTTCGGTC 5860108
Score = 100 bits (110), Expect = 7e-19
Identities = 90/113 (80%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
||| | |||||||||| | || ||||||||||| | ||| | |||||||||| ||
Sbjct 41820937 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 41820996
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTAC 119
| ||||| |||||| ||||||||| ||||| |||||||||||||||||||
Sbjct 41820997 GTTGTTACACCATTCATGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC 41821049
>seq7
Length=46770411
Score = 145 bits (160), Expect = 2e-32
Identities = 202/283 (71%), Gaps = 14/283 (5%)
Strand=Plus/Plus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
||||||| |||| || || ||||||| ||| ||| | || || ||| | |||
Sbjct 15000664 GCATCTTAACAGACATGTCTATTTCACCGAGCCTCTCTCTGCGATAGTGCCTAGACTGTT 15000723
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
|| || ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 15000724 ACACCTTTCGTGCAGGTTGGAACTTACCCGACAAGGAATTTTGCTACTTTAGGACCGTTA 15000783
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCC 188
| |||| ||||||| || ||| |||||||| || |||||| | | || | |||
Sbjct 15000784 TAGTTATGGCCGCCATTCACCAGGGCTTCGGTCGCCAGCTTCCCTATCATCAGTTCACCA 15000843
Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGC-GTCACACCCTATACGTCCACTTTCGTGTT 247
| |||| ||||| |||| |||||||| || ||| | ||| | ||
Sbjct 15000844 ACTTCCTTAAACTTCCAGCACTGGGCAGGCTGT---------TACATGGTCTTATGACTT 15000894
Query 248 TGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGT 290
||| || ||||||||| ||||||||||| || |||||
Sbjct 15000895 TGCGAAGACTTGTGTTTTTGGTAAACAGTCGCCCGGGGCTGGT 15000937
>seq1
Length=61571842
Score = 125 bits (138), Expect = 2e-26
Identities = 87/99 (88%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
|| |||||||| ||||| | ||||||||||||||||| || |||||||||||||||||||
Sbjct 48278782 ATGGTTACGCCTTTCGTACGGGTCGGAACTTACCCGATAAAGAATTTCGCTACCTTAGGA 48278841
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165
| ||||| ||||||||||| ||| |||||| ||||| ||
Sbjct 48278842 CTGTTATAGTTACGGCCGCTGTTCACCGGGTCTTCGGTC 48278880
>seq9
Length=72259479
Score = 86.0 bits (94), Expect = 2e-14
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 198 ACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGC 257
||||||| |||||||||||| |||| || |||||| || || | || ||||||| |
Sbjct 22919044 ACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCC 22919103
Query 258 TGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT 292
|||||| ||||||||||||||| | ||||||||
Sbjct 22919104 TGTGTTCTTAATAAACAGTCGCTACCTCCTGGTAT 22919138
>seq2
Length=61504503
Score = 86.0 bits (94), Expect = 2e-14
Identities = 57/62 (92%), Gaps = 1/62 (2%)
Strand=Plus/Plus
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||||||||| | ||||||| |||||||||||||| ||||||||| |||||||||||||||
Sbjct 3109600 ATCGTTACGTCTTTCGTGCTGGTCGGAACTTACCTGACAAGGAA-TTCGCTACCTTAGGA 3109658
Query 127 CC 128
||
Sbjct 3109659 CC 3109660
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260696765696
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |