Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq7 212 1e-52 seq8 190 4e-46 seq1 134 3e-29 seq9 132 1e-28 seq2 131 4e-28 seq4 109 1e-21 >seq7 Length=46770411 Score = 212 bits (234), Expect = 1e-52 Identities = 263/354 (74%), Gaps = 17/354 (5%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||||| || | || | ||||||||||| || | || || |||||| | | ||| Sbjct 15000664 GCATCTTAACAGACATGTCTATTTCACCGAGCCTCTCTCTGCGATAGTGCCTAGACTGTT 15000723 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || |||||||||| ||| ||||||||||||||||||||||| ||||| |||||||||||| Sbjct 15000724 ACACCTTTCGTGCAGGTTGGAACTTACCCGACAAGGAATTTTGCTACTTTAGGACCGTTA 15000783 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 |||||| ||||||| || || |||||| || | ||||| | | || | || Sbjct 15000784 TAGTTATGGCCGCCATTCACCAGGGCTTCGGTCGCCAGCTTCCCTATCATCAGTTCACCA 15000843 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGC-GTCAGCTCCTATACATCGTCTTGCGACTT 241 | |||||| |||||||||| |||||||| || ||||| ||||| ||||| Sbjct 15000844 ACTTCCTTAAACTTCCAGCACTGGGCAGGCTGT---------TACATGGTCTTATGACTT 15000894 Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG-GCCTGTCAT 300 || | || |||||||||||||||||||||| ||| || || ||| | ||| | | Sbjct 15000895 TGCGAAGACTTGTGTTTTTGGTAAACAGTCGCCCGGGGCTGGTCACTGTGACCCTCTTTT 15000954 Query 301 -AGA-CAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || ||||||||||||||| |||||| | || |||||||| ||||||||| Sbjct 15000955 GCGAGGGGGCACCCCTTCTCCCGAAGTTATGAGGCTATTTTGCCAAGTTCCTTA 15001008 >seq8 Length=47074253 Score = 190 bits (210), Expect = 4e-46 Identities = 131/148 (89%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 5859956 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 5860015 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5860016 ACGCCTTTCGTGTGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 5860075 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTT 154 ||||||||||||||||| | ||||||| Sbjct 5860076 TAGTTACGGCCGCCGTTCATCGGGGCTT 5860103 Score = 82.4 bits (90), Expect = 2e-13 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 41820937 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 41820996 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTAC 113 | ||||| || ||| ||| ||||| ||||| ||||||||||||||||||| Sbjct 41820997 GTTGTTACACCATTCATGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC 41821049 >seq1 Length=61571842 Score = 134 bits (148), Expect = 3e-29 Identities = 89/99 (90%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 56 CCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 115 |||| || |||||||||||||| ||||||||||||||||||| || |||||||||||||| Sbjct 48278777 CCCAGATGGTTACGCCTTTCGTACGGGTCGGAACTTACCCGATAAAGAATTTCGCTACCT 48278836 Query 116 TAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 154 |||||| ||||||||||||||||| ||| || ||| ||| Sbjct 48278837 TAGGACTGTTATAGTTACGGCCGCTGTTCACCGGGTCTT 48278875 >seq9 Length=72259479 Score = 132 bits (146), Expect = 1e-28 Identities = 139/183 (76%), Gaps = 10/183 (5%) Strand=Plus/Plus Query 192 ACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACC 251 |||||||||||||||||||| ||||| ||||||||||| || | |||||||||| || Sbjct 22919044 ACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCC 22919103 Query 252 TGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC------ATAGACA 305 |||||| || |||||||||||| ||| | | ||| || | | | ||| | Sbjct 22919104 TGTGTTCTTAATAAACAGTCGCTACCTCCTGGTATGTGCCGCTTTCCTAATCAAAAGATA 22919163 Query 306 G----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTT 361 | ||||||||||||| ||||||| |||||||||||||||||||||| || ||| Sbjct 22919164 GGAGAGCACCCCTTCTCCTGAAGTTACAGGGTCATTTTGCCGAGTTCCTTCGACATGGTT 22919223 Query 362 CTC 364 ||| Sbjct 22919224 CTC 22919226 >seq2 Length=61504503 Score = 131 bits (144), Expect = 4e-28 Identities = 214/306 (70%), Gaps = 37/306 (12%) Strand=Plus/Plus Query 52 AGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCT 111 ||| |||| ||||||||| ||||||||| |||||||||||||| ||||||||| |||||| Sbjct 3109591 AGTACCCATATCGTTACGTCTTTCGTGCTGGTCGGAACTTACCTGACAAGGAA-TTCGCT 3109649 Query 112 ACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGG--GGCTTAAGTTCACTGCTTCG 169 ||||||||||| || || ||| |||| || ||| ||| ||| | Sbjct 3109650 ACCTTAGGACCACCAT--TT---GCCAAGGTTTTTCGGCCGGC-----TTCCCTGTCATG 3109699 Query 170 ATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATC 229 | ||| | ||| |||| ||||||| |||| || || |||||| Sbjct 3109700 AGTGCACCAAC----TTCCTTGACCTTCCGGCACTAGG------------CCCATACATG 3109743 Query 230 GTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTG 289 ||||| |||||| ||| | |||||||||||||||||| ||||| ||| || ||| Sbjct 3109744 GTCTTACGACTTTGCACAGACCTGTGTTTTTGGTAAATAGTCGTCCGGG-----TCACTG 3109798 Query 290 CGGCCTGTCATAGACA---GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGT 346 || || | | | ||||||||||||||| |||||| ||| ||||| |||||| Sbjct 3109799 CGACCCCCTTTTGCGAGGGGGCACCCCTTCTCCCAAAGTTATAGGGCTATTTTCCCGAGT 3109858 Query 347 TCCTTA 352 | |||| Sbjct 3109859 TTCTTA 3109864 >seq4 Length=49548238 Score = 109 bits (120), Expect = 1e-21 Identities = 81/95 (85%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||| | ||| |||||||||||||| || |||||| ||||| |||||| || | Sbjct 17669822 CCTTGACCTTACGGCATTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGG 17669881 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCT 281 | ||||||||||||||||||||||||| |||||| Sbjct 17669882 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCT 17669916 Score = 95.1 bits (104), Expect = 3e-17 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||| |||| ||| |||||||||| || |||||| ||||| |||||| || | Sbjct 17669027 CCTTGACCTTCCGGCACTGGGTAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGG 17668968 Query 247 AAACCTGTGTTTTTGGTAAACA 268 | |||| ||||||||||||||| Sbjct 17668967 AGACCTATGTTTTTGGTAAACA 17668946 Score = 86.0 bits (94), Expect = 1e-14 Identities = 94/127 (74%), Gaps = 10/127 (8%) Strand=Plus/Minus Query 234 TGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGC 293 ||| |||| ||||| ||||||||||| |||||||||||| ||| | | ||| || Sbjct 37197605 TGCAACTTGGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGC 37197546 Query 294 CTGTC----------ATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCG 343 | | |||| |||||||||||||| |||||||||||||||||||||| Sbjct 37197545 TTTCCTAATCAAAATATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCG 37197486 Query 344 AGTTCCT 350 ||||||| Sbjct 37197485 AGTTCCT 37197479 Score = 78.8 bits (86), Expect = 2e-12 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 215 CAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCT 274 |||| || |||||| ||||| |||||| || || ||||||||||||||||||||||||| Sbjct 17669186 CAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCC 17669245 Query 275 TGGGCC 280 ||||| Sbjct 17669246 CGGGCC 17669251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062313010688