Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10]
8,188 sequences; 553,845,420 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq9 374 3e-101
seq2 282 1e-73
seq7 264 3e-68
seq1 255 2e-65
seq6 82.4 2e-13
seq3 77.0 1e-11
>seq9
Length=72259479
Score = 374 bits (414), Expect = 3e-101
Identities = 360/458 (79%), Gaps = 4/458 (1%)
Strand=Plus/Minus
Query 40 CCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAAT 99
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 35500926 CCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGG 35500867
Query 100 CTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAG 159
|||||||| | || ||||| || | ||||| | |||| ||| || | ||||
Sbjct 35500866 CTTGACATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCCTC--GGGAACGCGGACACAG 35500809
Query 160 GTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGC 219
||| ||||||| | ||||||||||||| ||| || |||||||||||||| ||||||||||
Sbjct 35500808 GTGGTGCATGGCTATCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAACGAGC 35500749
Query 220 GCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGAC 279
|||||||| | |||||||||| || ||||| || || || | ||| |||||||
Sbjct 35500748 GCAACCCTCGTGTTTAGTTGCCACTAT-AAGTTTGGAACCCTGAACAGACCGCCGGTGTT 35500690
Query 280 AAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACAC 339
|| ||||||||||| | ||| || | ||| ||||||||||||||||| ||||| ||||
Sbjct 35500689 AAGCCGGAGGAAGGAGAGGATGAGGCCAAGTCATCATGCCCCTTATGCCCTGGGCGACAC 35500630
Query 340 ACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAA 399
|||||||||||||| | |||||||| | || | ||||| ||| | ||| ||
Sbjct 35500629 ACGTGCTACAATGGGCGGGACAAAGGGTCGAGATCTCACGAGGGTGAGCTTACTCCAAAA 35500570
Query 400 AGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGT 459
| || |||||||||||||| || |||||||||| || ||||||| ||||||||||||
Sbjct 35500569 ACCCGTCCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGCAGGAATCGCTAGT 35500510
Query 460 AATCGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496
||||| | |||| ||| | |||||||| ||||||||
Sbjct 35500509 AATCGCCGGTCAGCCATACGGCGGTGAATCCGTTCCCG 35500472
Score = 149 bits (164), Expect = 2e-33
Identities = 158/207 (76%), Gaps = 1/207 (0%)
Strand=Plus/Plus
Query 297 GGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACA 356
||| || | ||| ||||| ||||||||||| ||||| |||||||||||||||||| |
Sbjct 3335797 GGATGAGGCCAAGTCATCGTGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGGCG 3335856
Query 357 ATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGG 416
|||||||| |||| ||||||| ||| || || ||| || ||||||||||
Sbjct 3335857 GGACAAAGGGTCGCGATCTCGCGAGGGTGAGCTAACTTCAAAAACCCGTCCTCAGTTCGG 3335916
Query 417 ATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CAT 475
|||| || |||||||||| || | |||| |||||||||||||||| | |||| |||
Sbjct 3335917 ATTGCAGGCTGCAACTCGCCTGCACGAAGTAGGAATCGCTAGTAATCACCGGTCAGCCAT 3335976
Query 476 GCTACGGTGAATACGTTCCCGCTCCCT 502
| |||||||| |||||||| ||||
Sbjct 3335977 ACGGCGGTGAATCCGTTCCCGGGCCCT 3336003
>seq2
Length=61504503
Score = 282 bits (312), Expect = 1e-73
Identities = 254/317 (80%), Gaps = 3/317 (1%)
Strand=Plus/Minus
Query 37 GGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCA 96
|| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 24021585 GGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCA 24021526
Query 97 AATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGA 156
|||||||| | || ||||| || ||||||| | |||| ||| || | |
Sbjct 24021525 GGGCTTGACATGCCGCGAATCCTCTTGAAATAGAGGGGTGCCCT--CGGGAACGCGGACA 24021468
Query 157 CAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACG 216
||| || |||||||||||||| |||| ||||||| || |||||||||||||| || || |
Sbjct 24021467 CAGATGGTGCATGGTTGTCGTTAGCTTGTGTCGTAAGGTGTTGGGTTAAGTCTCGTAATG 24021408
Query 217 AGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGT 276
||||||||| | | | |||||||||| ||| |||| || || || | ||| ||||||
Sbjct 24021407 AGCGCAACCATCATGTTTAGTTGCCACTATT-AGTTTGGAACCCTGAACAGACCGCCGGT 24021349
Query 277 GACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTA 336
| || ||||||||||| | ||| || | ||| ||||||||||||||||| ||||| |
Sbjct 24021348 GTTAAGCCGGAGGAAGGAGAGGATGAGGCCAAGTCATCATGCCCCTTATGCCGTGGGCGA 24021289
Query 337 CACACGTGCTACAATGG 353
|||||||||||||||||
Sbjct 24021288 CACACGTGCTACAATGG 24021272
Score = 187 bits (206), Expect = 7e-45
Identities = 186/237 (78%), Gaps = 3/237 (1%)
Strand=Plus/Plus
Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326
||||||| |||| | || ||||||||||||||| |||||||| || |||| ||||||||
Sbjct 5326014 GACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 5326073
Query 327 ATTTGGGCTACACACGTGCTACAATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTCA 385
||||| |||||||||||||||||| |||| |||| ||| ||| | | | |||
Sbjct 5326074 GGCTGGGCCACACACGTGCTACAATGG-CAATGACAATGGGAAGCAAGGCTGTAAGGCGG 5326132
Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445
||| ||| || |||| | ||| |||||||||| ||||||||||| | ||||||
Sbjct 5326133 AGCGAAT-CCGGAAAGATTGCCTCCATTCGGATTGTTCTCTGCAACTCGGGAACATGAAG 5326191
Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502
|| ||||||||||||||| |||||||||||| ||||||||| || |||| ||||
Sbjct 5326192 TTGAAATCGCTAGTAATCGCGGATCAGCATGCTGCGGTGAATATGTACCCGGGCCCT 5326248
Score = 167 bits (184), Expect = 7e-39
Identities = 178/234 (76%), Gaps = 17/234 (7%)
Strand=Plus/Plus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 5325407 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 5325466
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| ||||||| | |||||||||| ||||||| | |||
Sbjct 5325467 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACA---TATGA------ 5325517
Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173
| | | | | ||| ||| || || || | ||||||| ||||||| ||
Sbjct 5325518 -ACAACAAAACCTGTCCTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTG 5325576
Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227
||||||||||||||||||||||||| ||| |||||| |||||||| ||||||
Sbjct 5325577 TCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCT 5325630
Score = 113 bits (124), Expect = 1e-22
Identities = 109/139 (78%), Gaps = 1/139 (1%)
Strand=Plus/Plus
Query 359 ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGAT 418
|||||||| | || ||||||| |||| || ||| ||| || ||||||||||||
Sbjct 49076651 ACAAAGGGTCGTGATCTCGCGAGGGTAAGCTAACTCCAAAAACCCGTCCTCAGTTCGGAT 49076710
Query 419 TGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGC 477
|| || |||||||| | || ||||||| ||||||||||||||||| |||||| ||| |
Sbjct 49076711 TGCAGGCTGCAACTTGTCTGCATGAAGCAGGAATCGCTAGTAATCGCCGATCAGCCATAC 49076770
Query 478 TACGGTGAATACGTTCCCG 496
|||||||| ||||||||
Sbjct 49076771 GGCGGTGAATCCGTTCCCG 49076789
Score = 86.0 bits (94), Expect = 2e-14
Identities = 75/92 (82%), Gaps = 1/92 (1%)
Strand=Plus/Plus
Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326
|| |||| |||| | || ||||| |||| |||| |||||||| || |||| ||||||||
Sbjct 8657373 GATTGCCAGTGAGATACTGGAGGGAGGTAGGGATGACGTCAAGTCCGCATGGCCCTTATG 8657432
Query 327 ATTTGGGCTACACACGTGCTACAATGGACAAT 358
||||| |||||||||||||||||| ||||
Sbjct 8657433 GGCTGGGCCACACACGTGCTACAATGG-CAAT 8657463
>seq7
Length=46770411
Score = 264 bits (292), Expect = 3e-68
Identities = 252/320 (79%), Gaps = 3/320 (1%)
Strand=Plus/Plus
Query 37 GGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCA 96
|| |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||
Sbjct 27093367 GGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTTGATGCAAAGCGAAGAACCTTACCA 27093426
Query 97 AATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGA 156
|||||||| | ||| ||||| | | ||||| | |||| || || | |
Sbjct 27093427 GGGCTTGACATGCCGTGAATCCTCTTGGAAGAGAGGGGTACCCT--CAGGAACGCGGACA 27093484
Query 157 CAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACG 216
|||||| ||||||| |||||| |||||||| ||| || |||||||||||||| ||||| |
Sbjct 27093485 CAGGTGGTGCATGGCTGTCGTTAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAATG 27093544
Query 217 AGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGT 276
|| | |||||| | | |||||||||| | |||||| || || || | ||| ||||||
Sbjct 27093545 AGTGTAACCCTCATGTTTAGTTGCCA-CTATAAGTTTGGAACCCTGAACAGACCGCCGGT 27093603
Query 277 GACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTA 336
| || |||||||||| | ||| || | ||| |||||||||||||||| |||||| |
Sbjct 27093604 GTTAAGACGGAGGAAGGAGAGGATGAGGCCAAGACATCATGCCCCTTATGCCTTGGGCGA 27093663
Query 337 CACACGTGCTACAATGGACA 356
||||||||||||||||| ||
Sbjct 27093664 CACACGTGCTACAATGGGCA 27093683
Score = 77.0 bits (84), Expect = 1e-11
Identities = 80/103 (78%), Gaps = 3/103 (3%)
Strand=Plus/Plus
Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGG--GGACCCGCACAAGCGGTGGAGCATGTGG 64
||||||| ||||||| |||||||||||||| || | | ||| || ||||||| || ||
Sbjct 4595659 CGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCAC-CACCAGGCGTGGAGCCTGCGG 4595717
Query 65 TTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107
|||||| || |||| || ||| |||||||| || |||||
Sbjct 4595718 CTTAATTTGACTCAACACGGGGAAACTTACCAAGTCCAGACAT 4595760
>seq1
Length=61571842
Score = 255 bits (282), Expect = 2e-65
Identities = 259/334 (78%), Gaps = 4/334 (1%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| |||||||||||||||||||||||| ||| ||||||| ||| ||||
Sbjct 43626468 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCACACAAGCA-TGGGGCAT 43626410
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||| | |||| |||||||||||||||| ||| |||| | || ||||
Sbjct 43626409 GTGGTTTAATTCAATGCAAAGCGAAGAACCTTACCAGGGCTTCACATGCCGCGAATCCTC 43626350
Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180
| || | |||||| | ||||| ||| ||| | | ||||| ||| || |||||||||
Sbjct 43626349 TTGAAAGAGAGGTGTGCCCTT--GGGAACATGGACATAGGTGGTGCGTGACTGTCGTCAG 43626292
Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240
|||||| ||| || ||||||||||||| |||||| || |||||||| | ||||||||
Sbjct 43626291 CTCGTGCCGTAAGGGGTTGGGTTAAGTCTCGCAACTAGTGCAACCCTCGTGTTTAGTTGC 43626232
Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300
|| | |||||| || || || | ||| |||||| || || |||||||| | |||
Sbjct 43626231 CA-CTATAAGTTTGGAACCCTGAACAGACCACCGGTGTTAAGCCAGAGGAAGGAGAGGAT 43626173
Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGC 334
|| | ||| ||||||||||||||||| |||||
Sbjct 43626172 GAGGCCAAGTCATCATGCCCCTTATGCCCTGGGC 43626139
>seq6
Length=48101398
Score = 82.4 bits (90), Expect = 2e-13
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 414 CGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC 473
|||||||| ||||||||||| | |||||| || ||||||||||||||| |||||||
Sbjct 14260995 CGGATTGTTCTCTGCAACTCGGGAACATGAAGTTGAAATCGCTAGTAATCGCGGATCAGC 14261054
Query 474 ATGCTACGGTGAATA 488
|||| |||||||||
Sbjct 14261055 ATGCCGCGGTGAATA 14261069
>seq3
Length=64463019
Score = 77.0 bits (84), Expect = 1e-11
Identities = 80/103 (78%), Gaps = 3/103 (3%)
Strand=Plus/Minus
Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGG--GGACCCGCACAAGCGGTGGAGCATGTGG 64
||||||| ||||||| |||||||||||||| || | | ||| || ||||||| |||||
Sbjct 19326765 CGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCAC-CACCAGGCGTGGAGCCTGTGG 19326707
Query 65 TTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107
|||||| || |||| || ||| ||||||| || |||||
Sbjct 19326706 CTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACAT 19326664
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503876852480
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