Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq9 374 3e-101 seq2 282 1e-73 seq7 264 3e-68 seq1 255 2e-65 seq6 82.4 2e-13 seq3 77.0 1e-11 >seq9 Length=72259479 Score = 374 bits (414), Expect = 3e-101 Identities = 360/458 (79%), Gaps = 4/458 (1%) Strand=Plus/Minus Query 40 CCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAAT 99 ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 35500926 CCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGG 35500867 Query 100 CTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAG 159 |||||||| | || ||||| || | ||||| | |||| ||| || | |||| Sbjct 35500866 CTTGACATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCCTC--GGGAACGCGGACACAG 35500809 Query 160 GTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGC 219 ||| ||||||| | ||||||||||||| ||| || |||||||||||||| |||||||||| Sbjct 35500808 GTGGTGCATGGCTATCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAACGAGC 35500749 Query 220 GCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGAC 279 |||||||| | |||||||||| || ||||| || || || | ||| ||||||| Sbjct 35500748 GCAACCCTCGTGTTTAGTTGCCACTAT-AAGTTTGGAACCCTGAACAGACCGCCGGTGTT 35500690 Query 280 AAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACAC 339 || ||||||||||| | ||| || | ||| ||||||||||||||||| ||||| |||| Sbjct 35500689 AAGCCGGAGGAAGGAGAGGATGAGGCCAAGTCATCATGCCCCTTATGCCCTGGGCGACAC 35500630 Query 340 ACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAA 399 |||||||||||||| | |||||||| | || | ||||| ||| | ||| || Sbjct 35500629 ACGTGCTACAATGGGCGGGACAAAGGGTCGAGATCTCACGAGGGTGAGCTTACTCCAAAA 35500570 Query 400 AGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGT 459 | || |||||||||||||| || |||||||||| || ||||||| |||||||||||| Sbjct 35500569 ACCCGTCCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGCAGGAATCGCTAGT 35500510 Query 460 AATCGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 ||||| | |||| ||| | |||||||| |||||||| Sbjct 35500509 AATCGCCGGTCAGCCATACGGCGGTGAATCCGTTCCCG 35500472 Score = 149 bits (164), Expect = 2e-33 Identities = 158/207 (76%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 297 GGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACA 356 ||| || | ||| ||||| ||||||||||| ||||| |||||||||||||||||| | Sbjct 3335797 GGATGAGGCCAAGTCATCGTGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGGCG 3335856 Query 357 ATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGG 416 |||||||| |||| ||||||| ||| || || ||| || |||||||||| Sbjct 3335857 GGACAAAGGGTCGCGATCTCGCGAGGGTGAGCTAACTTCAAAAACCCGTCCTCAGTTCGG 3335916 Query 417 ATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CAT 475 |||| || |||||||||| || | |||| |||||||||||||||| | |||| ||| Sbjct 3335917 ATTGCAGGCTGCAACTCGCCTGCACGAAGTAGGAATCGCTAGTAATCACCGGTCAGCCAT 3335976 Query 476 GCTACGGTGAATACGTTCCCGCTCCCT 502 | |||||||| |||||||| |||| Sbjct 3335977 ACGGCGGTGAATCCGTTCCCGGGCCCT 3336003 >seq2 Length=61504503 Score = 282 bits (312), Expect = 1e-73 Identities = 254/317 (80%), Gaps = 3/317 (1%) Strand=Plus/Minus Query 37 GGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCA 96 || ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 24021585 GGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCA 24021526 Query 97 AATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGA 156 |||||||| | || ||||| || ||||||| | |||| ||| || | | Sbjct 24021525 GGGCTTGACATGCCGCGAATCCTCTTGAAATAGAGGGGTGCCCT--CGGGAACGCGGACA 24021468 Query 157 CAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACG 216 ||| || |||||||||||||| |||| ||||||| || |||||||||||||| || || | Sbjct 24021467 CAGATGGTGCATGGTTGTCGTTAGCTTGTGTCGTAAGGTGTTGGGTTAAGTCTCGTAATG 24021408 Query 217 AGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGT 276 ||||||||| | | | |||||||||| ||| |||| || || || | ||| |||||| Sbjct 24021407 AGCGCAACCATCATGTTTAGTTGCCACTATT-AGTTTGGAACCCTGAACAGACCGCCGGT 24021349 Query 277 GACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTA 336 | || ||||||||||| | ||| || | ||| ||||||||||||||||| ||||| | Sbjct 24021348 GTTAAGCCGGAGGAAGGAGAGGATGAGGCCAAGTCATCATGCCCCTTATGCCGTGGGCGA 24021289 Query 337 CACACGTGCTACAATGG 353 ||||||||||||||||| Sbjct 24021288 CACACGTGCTACAATGG 24021272 Score = 187 bits (206), Expect = 7e-45 Identities = 186/237 (78%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 5326014 GACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 5326073 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTCA 385 ||||| |||||||||||||||||| |||| |||| ||| ||| | | | ||| Sbjct 5326074 GGCTGGGCCACACACGTGCTACAATGG-CAATGACAATGGGAAGCAAGGCTGTAAGGCGG 5326132 Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 ||| ||| || |||| | ||| |||||||||| ||||||||||| | |||||| Sbjct 5326133 AGCGAAT-CCGGAAAGATTGCCTCCATTCGGATTGTTCTCTGCAACTCGGGAACATGAAG 5326191 Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 || ||||||||||||||| |||||||||||| ||||||||| || |||| |||| Sbjct 5326192 TTGAAATCGCTAGTAATCGCGGATCAGCATGCTGCGGTGAATATGTACCCGGGCCCT 5326248 Score = 167 bits (184), Expect = 7e-39 Identities = 178/234 (76%), Gaps = 17/234 (7%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 5325407 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 5325466 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| | |||||||||| ||||||| | ||| Sbjct 5325467 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACA---TATGA------ 5325517 Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173 | | | | | ||| ||| || || || | ||||||| ||||||| || Sbjct 5325518 -ACAACAAAACCTGTCCTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTG 5325576 Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||||| ||| |||||| |||||||| |||||| Sbjct 5325577 TCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCT 5325630 Score = 113 bits (124), Expect = 1e-22 Identities = 109/139 (78%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 359 ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGAT 418 |||||||| | || ||||||| |||| || ||| ||| || |||||||||||| Sbjct 49076651 ACAAAGGGTCGTGATCTCGCGAGGGTAAGCTAACTCCAAAAACCCGTCCTCAGTTCGGAT 49076710 Query 419 TGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGC 477 || || |||||||| | || ||||||| ||||||||||||||||| |||||| ||| | Sbjct 49076711 TGCAGGCTGCAACTTGTCTGCATGAAGCAGGAATCGCTAGTAATCGCCGATCAGCCATAC 49076770 Query 478 TACGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 49076771 GGCGGTGAATCCGTTCCCG 49076789 Score = 86.0 bits (94), Expect = 2e-14 Identities = 75/92 (82%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 || |||| |||| | || ||||| |||| |||| |||||||| || |||| |||||||| Sbjct 8657373 GATTGCCAGTGAGATACTGGAGGGAGGTAGGGATGACGTCAAGTCCGCATGGCCCTTATG 8657432 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAAT 358 ||||| |||||||||||||||||| |||| Sbjct 8657433 GGCTGGGCCACACACGTGCTACAATGG-CAAT 8657463 >seq7 Length=46770411 Score = 264 bits (292), Expect = 3e-68 Identities = 252/320 (79%), Gaps = 3/320 (1%) Strand=Plus/Plus Query 37 GGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCA 96 || |||||||||||||||||||||||||||||||| || |||| |||||||||||||||| Sbjct 27093367 GGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTTGATGCAAAGCGAAGAACCTTACCA 27093426 Query 97 AATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGA 156 |||||||| | ||| ||||| | | ||||| | |||| || || | | Sbjct 27093427 GGGCTTGACATGCCGTGAATCCTCTTGGAAGAGAGGGGTACCCT--CAGGAACGCGGACA 27093484 Query 157 CAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACG 216 |||||| ||||||| |||||| |||||||| ||| || |||||||||||||| ||||| | Sbjct 27093485 CAGGTGGTGCATGGCTGTCGTTAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAATG 27093544 Query 217 AGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGT 276 || | |||||| | | |||||||||| | |||||| || || || | ||| |||||| Sbjct 27093545 AGTGTAACCCTCATGTTTAGTTGCCA-CTATAAGTTTGGAACCCTGAACAGACCGCCGGT 27093603 Query 277 GACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTA 336 | || |||||||||| | ||| || | ||| |||||||||||||||| |||||| | Sbjct 27093604 GTTAAGACGGAGGAAGGAGAGGATGAGGCCAAGACATCATGCCCCTTATGCCTTGGGCGA 27093663 Query 337 CACACGTGCTACAATGGACA 356 ||||||||||||||||| || Sbjct 27093664 CACACGTGCTACAATGGGCA 27093683 Score = 77.0 bits (84), Expect = 1e-11 Identities = 80/103 (78%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGG--GGACCCGCACAAGCGGTGGAGCATGTGG 64 ||||||| ||||||| |||||||||||||| || | | ||| || ||||||| || || Sbjct 4595659 CGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCAC-CACCAGGCGTGGAGCCTGCGG 4595717 Query 65 TTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||||| || |||| || ||| |||||||| || ||||| Sbjct 4595718 CTTAATTTGACTCAACACGGGGAAACTTACCAAGTCCAGACAT 4595760 >seq1 Length=61571842 Score = 255 bits (282), Expect = 2e-65 Identities = 259/334 (78%), Gaps = 4/334 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||| ||||||| ||| |||| Sbjct 43626468 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCACACAAGCA-TGGGGCAT 43626410 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||| | |||| |||||||||||||||| ||| |||| | || |||| Sbjct 43626409 GTGGTTTAATTCAATGCAAAGCGAAGAACCTTACCAGGGCTTCACATGCCGCGAATCCTC 43626350 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | |||||| | ||||| ||| ||| | | ||||| ||| || ||||||||| Sbjct 43626349 TTGAAAGAGAGGTGTGCCCTT--GGGAACATGGACATAGGTGGTGCGTGACTGTCGTCAG 43626292 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||| |||||| || |||||||| | |||||||| Sbjct 43626291 CTCGTGCCGTAAGGGGTTGGGTTAAGTCTCGCAACTAGTGCAACCCTCGTGTTTAGTTGC 43626232 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || | |||||| || || || | ||| |||||| || || |||||||| | ||| Sbjct 43626231 CA-CTATAAGTTTGGAACCCTGAACAGACCACCGGTGTTAAGCCAGAGGAAGGAGAGGAT 43626173 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGC 334 || | ||| ||||||||||||||||| ||||| Sbjct 43626172 GAGGCCAAGTCATCATGCCCCTTATGCCCTGGGC 43626139 >seq6 Length=48101398 Score = 82.4 bits (90), Expect = 2e-13 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 414 CGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC 473 |||||||| ||||||||||| | |||||| || ||||||||||||||| ||||||| Sbjct 14260995 CGGATTGTTCTCTGCAACTCGGGAACATGAAGTTGAAATCGCTAGTAATCGCGGATCAGC 14261054 Query 474 ATGCTACGGTGAATA 488 |||| ||||||||| Sbjct 14261055 ATGCCGCGGTGAATA 14261069 >seq3 Length=64463019 Score = 77.0 bits (84), Expect = 1e-11 Identities = 80/103 (78%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGG--GGACCCGCACAAGCGGTGGAGCATGTGG 64 ||||||| ||||||| |||||||||||||| || | | ||| || ||||||| ||||| Sbjct 19326765 CGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCAC-CACCAGGCGTGGAGCCTGTGG 19326707 Query 65 TTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||||| || |||| || ||| ||||||| || ||||| Sbjct 19326706 CTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACAT 19326664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503876852480