Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq1 154 3e-35 seq6 114 3e-23 seq8 80.6 5e-13 >seq1 Length=61571842 Score = 154 bits (170), Expect = 3e-35 Identities = 173/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||||| ||| | |||||| ||||||| |||||||||| |||||||||||| Sbjct 53560996 GACAGTCTCAAGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGT 53560937 Query 173 CCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGGGT 229 ||||| | |||| | | ||| ||| | | |||||||||||| ||||| Sbjct 53560936 GCAAAGGTTTCCTCGGGCCAAACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAGGGA 53560880 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | || | | ||| ||||| |||||||||||| |||| ||||||| ||| Sbjct 53560879 GCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGACGG 53560820 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 53560819 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 53560770 Score = 125 bits (138), Expect = 1e-26 Identities = 106/129 (82%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 ||||||||| || ||||| | |||||||| | || | | ||| ||||| |||||||||| Sbjct 32221582 AGTGCAAAG-CAGAAGGGAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTC 32221524 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 | |||| ||||||| |||||| || ||||| ||||||||||| ||||||||||| ||| Sbjct 32221523 AGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACT 32221464 Query 331 CTGGGGATA 339 || |||||| Sbjct 32221463 CTAGGGATA 32221455 >seq6 Length=48101398 Score = 114 bits (126), Expect = 3e-23 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 217 AAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTT 276 |||||||||||| | |||||||| | || | | ||| ||||| |||||||||||||||| Sbjct 16540412 AAGGCAAAAGGGAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGGCTT 16540471 Query 277 AATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAA 322 | ||||||| |||||| || ||||| ||||||||||| | |||||| Sbjct 16540472 AGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAATGGATAA 16540517 >seq8 Length=47074253 Score = 80.6 bits (88), Expect = 5e-13 Identities = 142/206 (69%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 131 GTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC-AGC 189 |||| ||||||||| |||||| ||||||||||||||| | | ||| || ||| ||| Sbjct 41820748 GTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGGTGTGCGAAGGTAGGCTCAAGC 41820689 Query 190 TTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCA 249 | ||| |||| ||| || || | ||| | |||||| || ||| | Sbjct 41820688 GTTGATTCTGCTCATGAGCA-----TAATGGTATAAGCCTACCTGACTGTGAGACCGACT 41820634 Query 250 AGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTC 309 ||| | ||| || ||||||||| | || |||||||| || | ||||| ||| || Sbjct 41820633 GGTCGAACAGAGATGAAAGTCGGCCATAGTGATCCGGGAGTCCCATGTGGAAGGGCTCTC 41820574 Query 310 GCTCGACGGATAAAAGCTACCCTGGG 335 |||| |||||| |||| ||| | ||| Sbjct 41820573 GCTCAACGGATCAAAGGTACGCCGGG 41820548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982319561088