Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq8 98.7 1e-18 seq7 93.3 5e-17 seq1 78.8 1e-12 seq2 73.4 4e-11 >seq8 Length=47074253 Score = 98.7 bits (108), Expect = 1e-18 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| ||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 5859927 GGGTCTTTCTATCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 5859986 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || |||||| |||||||||||||||| Sbjct 5859987 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGTGGGTCGGAACTTACCCG 5860045 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 5860046 ACAAGGAATTTCGCTACCTTAGGACCGTTA 5860075 Score = 78.8 bits (86), Expect = 1e-12 Identities = 84/115 (73%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105 |||| || |||||||||| || | | ||||||||| | | || | ||||||| Sbjct 41820935 GGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGG 41820994 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTAC 160 |||||||||| ||||||||| ||||| ||||||||||||||||||| Sbjct 41820995 CAGTTGTTACACCATTCATGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC 41821049 >seq7 Length=46770411 Score = 93.3 bits (102), Expect = 5e-17 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| Sbjct 15000723 TACACCTTTCGTGCAGGTTGGAACTTACCCGACAAGGAATTTTGCTACTTTAGGACCGTT 15000782 Query 173 A 173 | Sbjct 15000783 A 15000783 >seq1 Length=61571842 Score = 78.8 bits (86), Expect = 1e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||| | ||||||||||||||||| || |||||||||||||||||||| ||| Sbjct 48278787 TACGCCTTTCGTACGGGTCGGAACTTACCCGATAAAGAATTTCGCTACCTTAGGACTGTT 48278846 Query 173 A 173 | Sbjct 48278847 A 48278847 >seq2 Length=61504503 Score = 73.4 bits (80), Expect = 4e-11 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand=Plus/Plus Query 120 TTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACC 169 ||||||| |||||||||||||| ||||||||| ||||||||||||||||| Sbjct 3109612 TTCGTGCTGGTCGGAACTTACCTGACAAGGAA-TTCGCTACCTTAGGACC 3109660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547156595412