Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1 214 4e-53 seq2 196 1e-47 >seq1 Length=61571842 Score = 214 bits (236), Expect = 4e-53 Identities = 150/170 (88%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||| |||||||| || |||||||||||||||||| Sbjct 35822437 CACGCGGCATTG-CTCCATCAGGCTTTTGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 35822379 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| | |||||| |||||||||||||| |||||| | Sbjct 35822378 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCTAGTGTGGCTGATCATCCTCTCGGACCAGCT 35822319 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 35822318 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 35822269 Score = 150 bits (166), Expect = 4e-34 Identities = 137/170 (81%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 || ||||||||| || ||| |||||||||||||| || ||||||||| |||||| Sbjct 8290840 CATGCGGCATTG-CTCCGTCAAGCTTTCGCCCATTGCGGAAAATTCCCCACCCTTGCCTC 8290782 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 | ||||||| |||||||||||||||| |||||||| |||||||| ||||| ||| || | Sbjct 8290781 TCATAGGAGTTTGGACCGTGTCTCAGTCCCAGTGTGGCTGATCATTCTCTCGGACTAGCT 8290722 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || | | |||||||||| | | | | ||| ||||||||||||||| ||| Sbjct 8290721 ACTG-CCATCGCCTTGGTAACCTACTGCCTTACCAACTAGCTAATCAGAC 8290673 Score = 86.0 bits (94), Expect = 1e-14 Identities = 58/64 (91%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 23 TTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGC 82 ||||| |||||| |||| ||||||| |||||||||||||||||||| |||||||||||| Sbjct 39523141 TTCACTCACGCGATATTG-CTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGC 39523199 Query 83 TGCC 86 |||| Sbjct 39523200 TGCC 39523203 Score = 77.0 bits (84), Expect = 7e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 90 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAG 146 ||||||||||||| |||||||||| | |||||||| |||||||||||||| ||| || Sbjct 15960545 CGTAGGAGTCTGGGCCGTGTCTCAATCCCAGTGTGGCTGATCATCCTCTCGGACTAG 15960489 >seq2 Length=61504503 Score = 196 bits (216), Expect = 1e-47 Identities = 146/170 (86%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||| ||||||| || ||| ||||||||||||||| || |||||||||||||||||| Sbjct 28199013 CACGTGGCATTG-CTCCGTCACGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTC 28198955 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 || ||||||||||| |||||||||||| ||| ||| |||||||||||||| |||||| | Sbjct 28198954 CCATAGGAGTCTGGGCCGTGTCTCAGTCCCAACGTGGCTGATCATCCTCTCGGACCAGCT 28198895 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||| ||||| ||| Sbjct 28198894 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGGTAATCAGAC 28198845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071912224640