Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1 210 8e-52 seq7 104 8e-20 seq8 91.5 5e-16 seq5 80.6 1e-12 >seq1 Length=61571842 Score = 210 bits (232), Expect = 8e-52 Identities = 335/476 (70%), Gaps = 30/476 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || | ||||||| |||||| ||||| | | ||| || |||| |||||| Sbjct 20545687 GCTGCGCCTCAACGTATTTCGGAGAGAACTAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 20545746 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||||||||| |||||| || | |||||||| | ||| |||| || ||| | || Sbjct 20545747 CCCTATCCACAACTCATCCACTGATTTTTCAACATCAGTCGGTTTGGACCTTTGCTTAGT 20545806 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | | || |||||| ||| |||||||||||||| | ||||||| | | | | ||| Sbjct 20545807 TTCATCCAAGCTTCATCCTAGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 20545866 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC-------CCCACACGGGT 367 | | |||||||| |||||||||||||||||||| | || | | Sbjct 20545867 ATAAT----CGCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGTGTTGCATTC-CCT 20545921 Query 368 TAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTG 427 ||||| || || | | | |||| |||||||||||||| | |||||| || Sbjct 20545922 TAACCAAGCCAC-CGCCTATGAGTCGCCGGCTCATTCTTCAACACGCACGCGGT------ 20545974 Query 428 GTACCTAAAAGGCAC-TTCAGCTCCGACGGATTGTAGGC---ACATGGTTTCAGGTACTA 483 || | ||| ||| |||| || | ||| || || ||||||| || ||| Sbjct 20545975 -----TAGAGATCACTTTCCCCTCCCACTGCTTGGGAGCTTAGCACGGTTTCACGTTCTA 20546029 Query 484 TTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGT 543 || |||| ||| | ||||| |||||||||||||||||| |||||| | |||||||||| Sbjct 20546030 TTCCACTACCCACTGGGGGTTCTTTTCACCTTTCCCTCATGGTACTACTTCGCTATCGGT 20546089 Query 544 CACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||| |||||||||||| ||| | |||||||| | |||||||||| ||| || Sbjct 20546090 CACCCAGGAGTATTTAGCCTTGAAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 20546145 Score = 136 bits (150), Expect = 1e-29 Identities = 157/211 (74%), Gaps = 13/211 (6%) Strand=Plus/Minus Query 392 CGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCC 451 ||| |||||||||||||| |||||||| |||| | | || ||| |||| Sbjct 35856869 CGCCGGCTCATTCTTCAACAGGCACGCGGTCAGA-GATCACT---------TTCCCCTCC 35856820 Query 452 GACGGATTGTAGGCACAT---GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTT 508 || | ||| || || ||||||| || |||||||||| ||| | ||||| |||| Sbjct 35856819 CACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACTGGGGGTTCTTT 35856760 Query 509 TCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACG 568 ||||||||||||||||||||| | |||||||||||||| |||||||||||| ||| Sbjct 35856759 TCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAA 35856700 Query 569 GGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||||| | |||||||||| ||| || Sbjct 35856699 GGTGGTCCTTGCTGATTCACACGGGATTCCA 35856669 >seq7 Length=46770411 Score = 104 bits (114), Expect = 8e-20 Identities = 155/220 (70%), Gaps = 19/220 (9%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||| | ||| || |||||||||| |||||| |||| | | ||| || |||| |||||| Sbjct 43947077 GCTACGCCTCAACGCATTTCGGGAAGAACCTGCTAGCTCTGGGTTCGAGTGGCATTTCAC 43947018 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| ||||| || | | |||||| | ||| ||||||| |||| | Sbjct 43947017 CCCTAACCACAACTCATCTGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTA------ 43946964 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 |||||| |||| |||||||||||||| | | || |||| | | | | || Sbjct 43946963 -------AAGCTTCATCCTGGTCATGGATAGATCACCTAGGTTTGGGTCCATAAGCAATG 43946911 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354 || | |||||||| |||| ||||||||||||||| Sbjct 43946910 ACAAT----CGCCCTATGAAGACTTGCTTTCGCTACGGCT 43946875 >seq8 Length=47074253 Score = 91.5 bits (100), Expect = 5e-16 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 488 ACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACC 547 ||| ||| | ||||| ||||||||||||||||||||||||| | |||||||||||||| Sbjct 34328924 ACTGCCCACTGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACC 34328983 Query 548 AAGGAGTATTTAG 560 |||||||||||| Sbjct 34328984 CAGGAGTATTTAG 34328996 >seq5 Length=59822759 Score = 80.6 bits (88), Expect = 1e-12 Identities = 113/156 (72%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| || |||| ||||| | | |||||||||| | | || |||| ||||| Sbjct 54655380 ACGCTCTACTAAAATAGATTTCACGAA-AACCAGCTATATCCTATCTTAGTTGGTCTTTC 54655438 Query 195 ACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCG 254 ||||||| ||||| || |||||| | ||| | || || |||||||| ||||| || | Sbjct 54655439 ACCCCTAGCCACAAGTTATCCCCGTATTTTGCCACATACGTGGGTTCTGTCCTTCAAGAT 54655498 Query 255 GTCTTA-CCCGCGCTTCAACCTGCCCATGGATAGAT 289 | ||| | | ||||||||||| ||||| ||||| Sbjct 54655499 CTGTTAGAGCTCTCTTCAACCTGCTCATGGGTAGAT 54655534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817451174912