Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1 172 1e-40 seq8 86.0 2e-14 seq2 77.0 8e-12 >seq1 Length=61571842 Score = 172 bits (190), Expect = 1e-40 Identities = 303/427 (71%), Gaps = 21/427 (5%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || ||||||| |||| || || | ||||||||| |||||||| || ||| |||| Sbjct 20545748 CCTATCCACAACTCAT-CCACTGA-TTTTTCAACATCAGTCGGTTTGGACCTTTGCTTAG 20545805 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | | | |||| ||| || ||| ||| ||||||||| ||| | || |||||| || Sbjct 20545806 TT-TCATCCAAGCTT-CATCCTAGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAG 20545861 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCT-------ATTC 176 | || || || ||||||| |||||||||||| ||||||| |||| | |||| Sbjct 20545862 C-AGTGA-TAATCGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGTGTTGCATTC 20545918 Query 177 GGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC 236 |||| | ||||| | || |||||| | | |||| | ||| | | |||| || | Sbjct 20545919 CCTTAACCAA-GCCACCGCCTATGAGTCGCCGGCTCATTCTTCAACACGCACGCGGTTAG 20545977 Query 237 CCAACAAAGTGGGCTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTC 293 | || | ||||||||||||| || || |||||||| | |||||| |||| Sbjct 20545978 AGATCACTTTCCCCTCCCACTGCTTGGGAGCTTAGCACGGTTTCACGTTCTATTCCACTA 20546037 Query 294 CCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAG 353 ||| || |||||||||||| ||||||||||| ||||||| ||| |||||||||| ||| Sbjct 20546038 CCCACTG-GGGGTTCTTTTCACCTTTCCCTCATGGTACTACTTCGCTATCGGTCACCCAG 20546096 Query 354 TAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTC 413 |||||||||||||| | | |||||| | ||||| || || | ||||| | | Sbjct 20546097 GAGTATTTAGCCTTGAAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCTCATG 20546156 Query 414 CTACTCG 420 ||||||| Sbjct 20546157 CTACTCG 20546163 Score = 140 bits (154), Expect = 8e-31 Identities = 164/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 204 CGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGT 263 ||| | | |||| | ||| ||| |||| |||| | || | ||||||||||||| Sbjct 35856869 CGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCACTTTCCCCTCCCACTGCTTGG 35856810 Query 264 ACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTC 320 || | |||||||| | ||||||||||| ||| || |||||||||||| |||||| Sbjct 35856809 GAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACTG-GGGGTTCTTTTCACCTTTC 35856751 Query 321 CCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCC 380 ||||||||||||| ||| |||||||||| ||| |||||||||||||| | | |||||| Sbjct 35856750 CCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCT 35856691 Query 381 CCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | ||||| || || | ||||| || | ||||||| Sbjct 35856690 TGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 35856651 >seq8 Length=47074253 Score = 86.0 bits (94), Expect = 2e-14 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||||||||||| ||||||||||||||||||| ||| |||||||||| ||| ||||||| Sbjct 34328935 GGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTT 34328994 Query 362 AG 363 || Sbjct 34328995 AG 34328996 >seq2 Length=61504503 Score = 77.0 bits (84), Expect = 8e-12 Identities = 102/140 (73%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 198 ATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACT 257 || |||||| | | |||| | | | ||| |||| ||||| | || | |||||||| Sbjct 56597256 ATGAGTCGCCGGCTCATTCTTCGACAGGCACGCGGTCACAGATCACTTTCCCCTCCCACT 56597197 Query 258 GCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCG 314 ||||| || | |||||||| | ||||||||| ||| | |||||||||||| Sbjct 56597196 GCTTGGGAGCTCAGCACGGTTTCACATTTTATTTCACTACCCACAG-GGGGTTCTTTTCA 56597138 Query 315 CCTTTCCCTCACGGTACTAG 334 ||||| |||||||||||||| Sbjct 56597137 CCTTTTCCTCACGGTACTAG 56597118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241498337792