Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq733 100 2e-19 seq5309 96.9 2e-18 seq1290 75.2 7e-12 seq7 75.2 7e-12 seq5 75.2 7e-12 seq3493 71.6 8e-11 seq4 71.6 8e-11 >seq733 Length=9930 Score = 100 bits (110), Expect = 2e-19 Identities = 77/86 (90%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| || |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 8782 TCCGAA-GTCCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 8838 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| ||||||||||| Sbjct 8839 GGCAGGGACGTAAT-CAACGCAAGCT 8863 >seq5309 Length=1492 Score = 96.9 bits (106), Expect = 2e-18 Identities = 76/86 (88%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||| ||||||| || ||||||||| ||||||||||| |||||||||| Sbjct 262 TCCGAAGGC-CTCACTCAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 206 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| ||||||| ||| Sbjct 205 GGCAGGGACGTAAT-CAACGCACGCT 181 >seq1290 Length=6132 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 5635 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 5578 Query 122 GCT 124 ||| Sbjct 5577 GCT 5575 >seq7 Length=46770411 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 1016349 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 1016406 Query 122 GCT 124 ||| Sbjct 1016407 GCT 1016409 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 1043033 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 1043090 Query 122 GCT 124 ||| Sbjct 1043091 GCT 1043093 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 1067034 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 1067091 Query 122 GCT 124 ||| Sbjct 1067092 GCT 1067094 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 4596202 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 4596145 Query 122 GCT 124 ||| Sbjct 4596144 GCT 4596142 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 4691713 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 4691770 Query 122 GCT 124 ||| Sbjct 4691771 GCT 4691773 Score = 71.6 bits (78), Expect = 8e-11 Identities = 54/61 (89%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 1867539 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 1867596 Query 122 G 122 | Sbjct 1867597 G 1867597 Score = 71.6 bits (78), Expect = 8e-11 Identities = 54/61 (89%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 1917219 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 1917276 Query 122 G 122 | Sbjct 1917277 G 1917277 Score = 71.6 bits (78), Expect = 8e-11 Identities = 55/63 (87%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | |||| |||||| |||||||||||||||||||||| | |||||| | Sbjct 4652790 TTCAATCGGTAGGA-GCGATGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 4652733 Query 122 GCT 124 ||| Sbjct 4652732 GCT 4652730 >seq5 Length=59822759 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 47012332 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 47012275 Query 122 GCT 124 ||| Sbjct 47012274 GCT 47012272 Score = 71.6 bits (78), Expect = 8e-11 Identities = 55/63 (87%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | |||||||||| |||||||||||||||||||||| | |||||| | Sbjct 46945224 TTCAATCGGTAGGA-GCGACGGGCGATGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 46945167 Query 122 GCT 124 ||| Sbjct 46945166 GCT 46945164 >seq3493 Length=2198 Score = 71.6 bits (78), Expect = 8e-11 Identities = 54/61 (89%), Gaps = 2/61 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 547 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 490 Query 122 G 122 | Sbjct 489 G 489 >seq4 Length=49548238 Score = 71.6 bits (78), Expect = 8e-11 Identities = 55/63 (87%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||| ||| | ||||||||||| |||||||||||||||||||||| | |||||||| Sbjct 42055647 TTCAATCGATAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCAA 42055590 Query 122 GCT 124 || Sbjct 42055589 TCT 42055587 Score = 71.6 bits (78), Expect = 8e-11 Identities = 55/63 (87%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||| | |||||||||||||||||||||| | |||||| | Sbjct 45118392 TTCAATCGGTAGGA-GCGACGGGCAGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 45118449 Query 122 GCT 124 ||| Sbjct 45118450 GCT 45118452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300776909840