Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1 215 1e-53 seq2 181 2e-43 >seq1 Length=61571842 Score = 215 bits (238), Expect = 1e-53 Identities = 232/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| ||||||| ||| ||||||| | || || ||||||||||||||||||||| Sbjct 35822432 GGCATTGCTCCATCAGGCTTTTGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 35822373 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||| | |||||| | ||| |||||| | || ||||| ||| Sbjct 35822372 GAGTCTGGGCCGTGTCTCAGTCCTAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 35822313 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || || Sbjct 35822312 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTTGG 35822253 Query 181 G-CGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 | ||| || || | || ||||| | | || | ||||||||| Sbjct 35822252 GTGGATTTCTCCTT-------------TTCC-TCCTCAGCC--TACGGGGTATTAGCAAC 35822209 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||||||||||||||||| || Sbjct 35822208 CGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGTGTTACTCACCCGTTCG 35822150 Query 300 CCACT 304 ||||| Sbjct 35822149 CCACT 35822145 Score = 114 bits (126), Expect = 3e-23 Identities = 133/178 (75%), Gaps = 1/178 (1%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||| | |||| ||||||| | || || |||||| |||||| | ||| Sbjct 8290835 GGCATTGCTCCGTCAAGCTTTCGCCCATTGCGGAAAATTCCCCACCCTTGCCTCTCATAG 8290776 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||| ||| |||||||||||||||| |||||| | ||| ||||| | | ||||| | Sbjct 8290775 GAGTTTGGACCGTGTCTCAGTCCCAGTGTGGCTGATCATTCTCTCGGACTAGCTACTG-C 8290717 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTT 178 | ||| |||||| ||| | || |||||||| |||||| | | ||||||| || || Sbjct 8290716 CATCGCCTTGGTAACCTACTGCCTTACCAACTAGCTAATCAGACACGAGCCCCTCCTT 8290659 >seq2 Length=61504503 Score = 181 bits (200), Expect = 2e-43 Identities = 147/178 (83%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||| | |||| ||||||||| || || ||||||||||||||||| ||| Sbjct 28199008 GGCATTGCTCCGTCACGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCCCATAG 28198949 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||||||||||||||||||||| ||||| | ||| |||||| | || ||||| ||| Sbjct 28198948 GAGTCTGGGCCGTGTCTCAGTCCCAACGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 28198889 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTT 178 | ||| |||||| |||||| ||||||||||| ||||| | ||||||||| || || Sbjct 28198888 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGGTAATCAGACGCGAGCCCCTCCTT 28198831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998318251008