Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq7 150 4e-34 seq9 149 1e-33 seq1 98.7 2e-18 seq4 84.2 5e-14 >seq7 Length=46770411 Score = 150 bits (166), Expect = 4e-34 Identities = 171/226 (76%), Gaps = 9/226 (4%) Strand=Plus/Minus Query 179 ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCC 234 ||||||||||||| | || ||| | ||| ||||||||| ||| |||| |||| Sbjct 43947443 ACGCTCCCCTACCGATGCATTTTGACA---TTCCATAGCTTCGGCAGATCGCTTA-GCCC 43947388 Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294 | | ||| || |||| | || || || | ||||||||| |||||||| |||| | Sbjct 43947387 TGTT-CATCTTCAGCGCAAGGGCGCTCGATCATTAAGCTATTACACACTCTTTAAAGGGT 43947329 Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGT 354 ||||||||| | || ||||| |||| ||||| ||| | |||| |||||| ||||||| Sbjct 43947328 GGCTGCTTCTAGGCAAACCTTCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTGAGC 43947269 Query 355 CACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | || |||||||||||| ||| ||||| ||||||||||||||||| Sbjct 43947268 GATCATTTAGGGGCCTTAACTGGTGATCCGGGCTGTTTCCCTCTCG 43947223 Score = 75.2 bits (82), Expect = 3e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || || |||||| |||||||||||||||| |||| |||||||||| | || ||||||||| Sbjct 28317993 CTCGATCAGTGAACTATTACGCACTCTTTAAAGGGTGGCTGCTTCTAGGCAAACCTCCTG 28318052 Query 319 G 319 | Sbjct 28318053 G 28318053 >seq9 Length=72259479 Score = 149 bits (164), Expect = 1e-33 Identities = 140/177 (79%), Gaps = 1/177 (1%) Strand=Plus/Plus Query 224 AACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACT 283 ||| ||||||||| | ||| || |||| || || ||||||||||||||||||| Sbjct 1674418 AACCTAAGCCCCGTT-CATCTTCAGCGCAAGGGTGCTCGATCAGTGAGCTATTACGCACT 1674476 Query 284 CTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTT 343 |||| |||| |||||||||| || ||||||||| ||||| ||| | |||| ||||| Sbjct 1674477 CTTTAAAGGGTGGCTGCTTCTTGGCAAACCTCCTGACTGTCTTTGCACCCCCACCTCCTT 1674536 Query 344 TCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | ||||||| || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 1674537 TATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 1674593 >seq1 Length=61571842 Score = 98.7 bits (108), Expect = 2e-18 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348 |||| |||||||||| | || |||||||||| | ||| ||| | |||| |||||| || Sbjct 20545433 AAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTATCTTTGCACCCCCACCTCCTTTATCA 20545492 Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||||| || ||| |||||||||||| ||||| ||||| ||| ||||||| Sbjct 20545493 CTGAGCGGTCATTTAAGGGCCTTAGCTGGTGATCCGGGCTATTTGCCTCTCG 20545544 >seq4 Length=49548238 Score = 84.2 bits (92), Expect = 5e-14 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 317 TGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTG 376 ||| ||||| ||| | |||| |||||| ||||||| || |||||||||||||||| Sbjct 17665314 TGGCTGTCTTTGCACCCCCACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTG 17665373 Query 377 ATGATCTGGGCTGTTTCCCTCTCG 400 ||||| ||||||||||||||||| Sbjct 17665374 GTGATCCGGGCTGTTTCCCTCTCG 17665397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177503578112