Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq2 109 5e-22 seq9 86.0 5e-15 seq3 80.6 2e-13 >seq2 Length=61504503 Score = 109 bits (120), Expect = 5e-22 Identities = 121/160 (76%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| | | | ||||| || ||| ||||| ||| | | Sbjct 5326180 CGAGTTGCAGAGAACAATCCGAATGGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 5326122 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| ||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 5326121 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 5326062 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 5326061 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 5326022 Score = 89.7 bits (98), Expect = 4e-16 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| |||| ||||||||||||||| ||||||||||||||||| | Sbjct 8657459 CCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATGCGGACTTGACGTCATCCCTA 8657400 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||| ||||| || | |||| Sbjct 8657399 CCTCCCTCCAGTATCTCAC 8657381 >seq9 Length=72259479 Score = 86.0 bits (94), Expect = 5e-15 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| | ||||| |||||| | Sbjct 35500535 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTAAGCTCACCCTCGTGA 35500594 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | || |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 35500595 GATCTCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 35500654 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || |||||| | |||||| | ||||||||||| || Sbjct 35500655 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 35500689 >seq3 Length=64463019 Score = 80.6 bits (88), Expect = 2e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 93 ACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCG 152 ||||||| |||| || ||||||||||| |||||||||||||||||||||||||||| Sbjct 19602009 ACGTGTGTGGCCCAGCCTATAAGGGCCATACGGACTTGACGTCATCCCCACCTTCCTCCA 19602068 Query 153 GTTTGTCAC 161 || | |||| Sbjct 19602069 GTATCTCAC 19602077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415967002360