Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq1 140 5e-31 seq2 93.3 7e-17 seq4 78.8 2e-12 >seq1 Length=61571842 Score = 140 bits (154), Expect = 5e-31 Identities = 202/285 (71%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | |||||||| || ||| || |||||||| | Sbjct 35822778 GCTTTCGTCTCTCAGTGTCAGTGTCGGTCCAGCAGAGTGCTTTCACCGTTGGTGTTCTTT 35822719 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 || || | |||||||||| || ||| | |||||| |||| || | | |||| | Sbjct 35822718 TCGATCTCAATGCATTTCACCACTCCACCAGAAATTCCCTCTGCCCCTACCGTACTCCAA 35822659 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | |||||| Sbjct 35822658 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAA 35822599 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| || ||| Sbjct 35822598 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTA 35822539 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| |||||||||||| ||||||||| ||||||||||||| || Sbjct 35822538 CCGTGGCTGCTGGCACAAAGTTAGCCGATGCTTATTCCTCAGATA 35822494 Score = 91.5 bits (100), Expect = 2e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | |||||| |||||| | |||||||||||||||| ||| || || | Sbjct 8290999 CCACCTACGTACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTGCT 8290940 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||| ||||||||| | ||||||||||| || Sbjct 8290939 GCGGCTGCTGGCACAGAGTTAGCCGATGGTTATTCCTCAGATA 8290897 Score = 78.8 bits (86), Expect = 2e-12 Identities = 167/247 (68%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 44 GCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103 || ||| || |||||||| | | || || | |||||||| |||| ||| | |||| | Sbjct 43626629 GCTTTCACCGTTGGTGTTCTTTCCAATCTCAATGCATTTCATCGCTCCACCAGAAATTTC 43626688 Query 104 GATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGG-CTATGGGTTGAGCCCA 162 | || || | | |||| || |||||| | || | ||| |||||||| || Sbjct 43626689 CTCTACCCCTACTGTACTCCAGCTTGGTAGTTTCCACCGCCTGTCTA-GGGTTGAGTCCT 43626747 Query 163 TAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGA 222 | ||| | | || ||| || |||||| ||| || |||||| | || || Sbjct 43626748 GGGATTTGTCGGCGGATTTGAAAAGCCACCTACAGATGCTTCACGCCCAATCATTCAAGA 43626807 Query 223 TAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||| ||||| ||| | |||| ||||||||||||| ||||||| | |||||||| Sbjct 43626808 TAACACTTGCACCCTCTATCTTACAACGGCTGCTGGCACAGAGTTAGCTGATGCTTATTC 43626867 Query 283 CTCAGGT 289 ||||||| Sbjct 43626868 CTCAGGT 43626874 >seq2 Length=61504503 Score = 93.3 bits (102), Expect = 7e-17 Identities = 183/271 (68%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16 CTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTA 75 ||||| |||||| | | || || || |||||| || ||||| | | ||| || | Sbjct 28199340 CTCAGTGTCAGTGTCAGCCCGTCAGAGTGCTTTCGCCGTTGCTGTTCTTTCCTATCTCAA 28199281 Query 76 CGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTT 135 |||||| || || |||| | |||||| |||| || | |||| || |||| Sbjct 28199280 TTCATTTCTCCACTCCACAGGAAATTCCCTCTGCCCCTACCATACTCCAGCTTGGTAGTT 28199221 Query 136 TCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTAC 195 || | || | ||||||||||| | ||| || | |||| | ||| ||||| Sbjct 28199220 TCTACCGCTTGTGCAGGGTTGAGCCCTAGGATTTGACGGCGGACTAGAAAACCCACCTAC 28199161 Query 196 ACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGC 255 | | ||||| |||||| |||||||||| ||||| ||| | ||||||| | | | Sbjct 28199160 AGACGCTTTATGCCCAATCGTTCCGGATAACACTTGCATCCTCTATCTTACCGCAGATCC 28199101 Query 256 TGGCACGTAGTTAGCCGTGGCTTATTCCTCA 286 ||||| ||||||||| |||||||||||| Sbjct 28199100 TGGCATAGAGTTAGCCGATGCTTATTCCTCA 28199070 >seq4 Length=49548238 Score = 78.8 bits (86), Expect = 2e-12 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 223 TAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||| ||| || ||||||||||||||||||| ||||||||| |||||||| Sbjct 17670215 TAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTC 17670156 Query 283 CTCAGGTA 290 ||||| || Sbjct 17670155 CTCAGATA 17670148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828734258548