Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq7 134 1e-29 seq5 134 1e-29 seq4454 125 7e-27 seq3 125 7e-27 seq4 122 9e-26 seq9 109 6e-22 seq432 98.7 1e-18 >seq7 Length=46770411 Score = 134 bits (148), Expect = 1e-29 Identities = 139/178 (78%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| ||| | |||| | |||||||| ||||| Sbjct 1035230 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 1035171 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | |||| ||||| ||| || | ||| || |||||||| | Sbjct 1035170 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTA 1035113 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||| ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 1035112 ATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 1035055 Score = 134 bits (148), Expect = 1e-29 Identities = 139/178 (78%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| ||| | |||| | |||||||| ||||| Sbjct 1067946 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 1067887 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | |||| ||||| ||| || | ||| || |||||||| | Sbjct 1067886 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTA 1067829 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||| ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 1067828 ATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 1067771 Score = 134 bits (148), Expect = 1e-29 Identities = 139/178 (78%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||| | ||| | |||| |||||||||| ||||| Sbjct 4595283 TTACTTTGAAGAAATTAGAGTGCTCAAAGTAAGCCATCGCTCTGAATACATTAGCATGGG 4595342 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | |||| ||||| ||| || | ||| || |||||||| | Sbjct 4595343 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTA 4595400 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||| ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 4595401 ATAGGGACAGTCGGGGGCATTTGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 4595458 Score = 131 bits (144), Expect = 2e-28 Identities = 138/178 (78%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| ||| | |||| | |||||||| ||||| Sbjct 4651870 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 4651929 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | |||| ||||| ||| || | ||| || |||||||| | Sbjct 4651930 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTA 4651987 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||| ||| ||||||||| | ||||| || |||| |||||||||||||| |||||| Sbjct 4651988 ATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGAATTTAT 4652045 Score = 131 bits (144), Expect = 2e-28 Identities = 138/178 (78%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| ||| | |||| | |||||||| |||| Sbjct 4692632 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGAG 4692573 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | |||| ||||| ||| || | ||| || |||||||| | Sbjct 4692572 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTA 4692515 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||| ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 4692514 ATAGGGACAGTCGGGGGCATTTGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 4692457 Score = 129 bits (142), Expect = 6e-28 Identities = 139/179 (78%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| ||| | ||| | |||||||| ||||| Sbjct 1921785 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTTTGGATACATTAGCATGGG 1921726 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTT-TGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||| | |||||| | |||| |||||| ||| || | ||| || |||||||| Sbjct 1921725 ATAACATCATAGGAT-TCCGGTCCTATTTCTGTTGGCCTTCGGGATCGGA-GTAATGATT 1921668 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 |||| ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 1921667 AATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 1921609 Score = 122 bits (134), Expect = 9e-26 Identities = 136/178 (76%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| ||| | |||| | |||||||| ||||| Sbjct 2920073 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 2920014 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | |||| ||||| ||| || | ||| || |||||||| | Sbjct 2920013 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTA 2919956 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||| ||| ||||||||| | |||| || || | ||||||||||||| ||||||| Sbjct 2919955 ATAGGGACAGTCGGGGGCATTCATATTTCATGGTTAGAGGTGAAATTCTTTGATTTAT 2919898 Score = 116 bits (128), Expect = 4e-24 Identities = 135/178 (76%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| ||| | |||| | |||||||| ||||| Sbjct 25849942 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 25850001 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | ||||| | |||| ||||| ||| || | ||| | | || ||| | Sbjct 25850002 ATAACATGCTAGGAT-TCCGGTCCTATTATGTTGGCCTTCGGGATTGGA-GCAAGGATTA 25850059 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||| ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 25850060 ATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 25850117 >seq5 Length=59822759 Score = 134 bits (148), Expect = 1e-29 Identities = 139/178 (78%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| ||| | |||| | |||||||| ||||| Sbjct 47011413 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 47011472 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | |||| ||||| ||| || | ||| || |||||||| | Sbjct 47011473 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTA 47011530 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||| ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 47011531 ATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 47011588 Score = 125 bits (138), Expect = 7e-27 Identities = 137/178 (77%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| ||| | ||| | |||||||| ||||| Sbjct 46931010 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTTTGGATACATTAGCATGGG 46931069 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | |||| ||||| ||| || | ||| || |||||||| | Sbjct 46931070 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTA 46931127 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 46931128 ACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 46931185 Score = 104 bits (114), Expect = 2e-20 Identities = 135/183 (74%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| |||||| || | |||||||| ||| || ||| | |||||||| ||||| Sbjct 16769033 TTACTTTGAAGAAATTATAGTGCTCAAAGCAAGCCATTTCTCTGGATACATTAGCATGGG 16768974 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | || | ||||| ||| || || |||| || ||||| || | Sbjct 16768973 ATAACATCATAGGAT-TCCGATCCTATTGTGTTGGCTTTCAGGATCGGA-GTAATAATTA 16768916 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAA-----AGGTGAAATTCTTGGATT 187 ||| ||| |||| ||| | ||||| || ||||| ||||||||||||| ||| Sbjct 16768915 ATAGGGACAGTCAAGGGCATTTGTATTTCATAGTCAATTAGGAGGTGAAATTCTTAAATT 16768856 Query 188 TAT 190 ||| Sbjct 16768855 TAT 16768853 >seq4454 Length=1743 Score = 125 bits (138), Expect = 7e-27 Identities = 137/178 (77%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| ||| | ||| | |||||||| ||||| Sbjct 258 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTTTGGATACATTAGCATGGG 199 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | |||| ||||| ||| || | ||| || |||||||| | Sbjct 198 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTA 141 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 140 ACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 83 >seq3 Length=64463019 Score = 125 bits (138), Expect = 7e-27 Identities = 137/178 (77%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||| ||||| | |||||||| ||| | |||| | |||||||| ||||| Sbjct 19327260 TTACTTTGAAGAAACTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 19327319 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | ||| ||||| ||| || | ||| || |||||||| | Sbjct 19327320 ATAACATCATAGGAT-TCTGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTA 19327377 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||| ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 19327378 ATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 19327435 >seq4 Length=49548238 Score = 122 bits (134), Expect = 9e-26 Identities = 138/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| ||| | |||| | ||| |||| ||| Sbjct 45119314 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATAAATTAGCAT 45119255 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 | |||| | ||||| | |||| ||||| ||| || | |||| || ||||||| Sbjct 45119254 AGGATAACATCCTAGGAT-TCCGGTCCTATTGTGTTGGCCTTCAGGATCGGA-GTAATGA 45119197 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | |||| || ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 45119196 TTAATAGGGGCAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 45119137 Query 190 T 190 | Sbjct 45119136 T 45119136 >seq9 Length=72259479 Score = 109 bits (120), Expect = 6e-22 Identities = 134/179 (75%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGA-ATACATTACCATGGA 72 |||||||||| ||||||||| |||||||| ||| | |||| |||| ||| ||||| Sbjct 24699902 TTACTTTGAAGAAATTAGAGTACTCAAAGCAAGCCATCGCTCTTGATACGTTAGCATGGG 24699843 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | ||| ||||| ||| || | ||| || ||||||| | Sbjct 24699842 ATAACATCATAGGAT-TCTGGTCCTATTGTGTTGGCCTTCGGGATCGGAA-TAATGATTA 24699785 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTATT 191 ||| ||| ||||||||| | ||||| || || | |||||||||||||||||||||| Sbjct 24699784 ATAGGGACAGTCGGGGGCATTCGTATTTCATAGTTAGAGGTGAAATTCTTGGATTTATT 24699726 >seq432 Length=13724 Score = 98.7 bits (108), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 37 TCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGAATAATAGAATAGGACGTGCGGTT 95 |||||||| ||| | |||| | |||||||| ||||| |||| | |||||| | |||| Sbjct 8010 TCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGAT-TCCGGTC 8068 Query 96 CTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAG 155 ||||| ||| || | ||| || |||||||| |||| | | |||| |||| | | Sbjct 8069 CTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTAATAGGCACAGTCAGGGGCATTCG 8127 Query 156 TATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 |||| || |||| ||||||||||||||||||||| Sbjct 8128 TATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 8162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511959387520