Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq6 212 1e-52 seq8 129 9e-28 seq1 114 2e-23 seq730 75.2 2e-11 >seq6 Length=48101398 Score = 212 bits (234), Expect = 1e-52 Identities = 191/239 (80%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| |||| |||| |||||| |||| | |||| |||| ||| |||||| Sbjct 25351866 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATGCTCTCCACACTTGGCTACCCAGCG 25351807 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| ||||| ||||||||||||| |||| Sbjct 25351806 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGTGTCCTTCCCGGTCCTCTCATACT 25351747 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| || ||| |||||||| |||||| || Sbjct 25351746 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGAATATGGACCGAAGTGTCTCACG 25351687 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 | |||||||||||||||| ||| || | ||||||||||||||||||||||||||| ||| Sbjct 25351686 ATGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACC 25351628 >seq8 Length=47074253 Score = 129 bits (142), Expect = 9e-28 Identities = 98/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| |||||||| |||| |||| |||| |||||| ||| ||| || |||| || ||| Sbjct 45449182 GATAGGAACCGAACTATCTCACGACATTCTAAACCCAACTCACGTACCACTTTCATCGGC 45449241 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||| || |||||||||||||| ||||| |||||||||| || ||| |||||||| Sbjct 45449242 GAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCG 45449297 Score = 114 bits (126), Expect = 2e-23 Identities = 118/153 (77%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| |||| |||| |||||| |||||| |||| |||| ||| |||||| Sbjct 34328671 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCACACTTGGCTACCCAGCG 34328730 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 34328731 TTTACCGTAGGCATGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 34328790 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCAC 155 | ||| || ||||||||| || |||||||| Sbjct 34328791 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCAC 34328823 >seq1 Length=61571842 Score = 114 bits (126), Expect = 2e-23 Identities = 83/96 (86%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 180 GCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGA 239 ||||||||||||||||||||| ||| || | ||||||||||||||||||||||||||| | Sbjct 53560624 GCGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAA 53560683 Query 240 CCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || || |||| ||||| | || |||||||||||| Sbjct 53560684 CCACCTACAGCTCCAGGTGGCGAAGAGCCGACATCG 53560719 >seq730 Length=9948 Score = 75.2 bits (82), Expect = 2e-11 Identities = 106/149 (71%), Gaps = 4/149 (3%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| | |||| ||||| ||||| ||| | Sbjct 5443 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGTGATGCTATTGGCGTGACAACCGGTAC 5384 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCC-- 146 |||| ||||| ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 5383 ACCATAGGTTGACCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCACAGTTCTCCCT 5324 Query 147 --TACGCCCACGACGGATAGGGACCGAAC 173 || || ||| |||||| ||||||| Sbjct 5323 TTAACACCAACGGTAGATAGGAACCGAAC 5295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780738065968