Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1 253 5e-65 seq2 181 3e-43 >seq1 Length=61571842 Score = 253 bits (280), Expect = 5e-65 Identities = 299/403 (74%), Gaps = 30/403 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| |||||||||| ||||||| Sbjct 35822463 TTGACGACCCGTAGGCCTTCCACCTCCACGCGGCATTGCTCCATCAGGCTTTTGCCCATT 35822404 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct 35822403 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCTAGTGT 35822344 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 35822343 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 35822284 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| || | || | || || ||| Sbjct 35822283 ACTAGCTAATCAGACGCGAGCCCCTCC----TTGGGTGG-----ATTTCTCC--TTTTCC 35822235 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||||| ||| | ||||||| |||| Sbjct 35822234 TCCTCAGCC--TACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCA 35822177 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | |||||||||||| ||||||| ||| || || |||||| Sbjct 35822176 GGTTCTTACGTGTTACTCACCCGTTCGCCACT------GGAAACACCA-----CTTCCT- 35822129 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCA 407 ||||||||||||||||||| || ||||||||||||||| Sbjct 35822128 -----GTTCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCA 35822091 Score = 168 bits (186), Expect = 2e-39 Identities = 284/405 (70%), Gaps = 31/405 (8%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || ||||||| |||||||| | | || ||||||| ||| | ||| |||| |||||||| Sbjct 8290866 TTGACAACCCATAGGCCTTCCACTTCCATGCGGCATTGCTCCGTCAAGCTTTCGCCCATT 8290807 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||||||| |||||| | ||||||| |||||||||||||||| ||||||| Sbjct 8290806 GCGGAAAATTCCCCACCCTTGCCTCTCATAGGAGTTTGGACCGTGTCTCAGTCCCAGTGT 8290747 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||| ||||| ||| ||||| | | |||||| ||| | | | || ||| Sbjct 8290746 GGCTGATCATTCTCTCGGACTAGCTACTG-CCATCGCCTTGGTAACCTACTGCCTTACCA 8290688 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| | | || || | || || |||| Sbjct 8290687 ACTAGCTAATCAGACACGAGCCCCTCC--TTG-GA------CGGATTTCTCC--TTTTGC 8290639 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | |||| |||| ||||||||| || ||| | ||||||| |||| Sbjct 8290638 TCCTCAGCC--TACGGGGTACTAGCAACCGTTTCCGGTTGTTGTTCCCCTCCTAAGGGCA 8290581 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | ||||| |||| | |||||| || ||| || || |||||| Sbjct 8290580 GATTCTTACGCGTTACTTACCCATTCGCCAC-CG-----GAAACACCA-----CTTCCT- 8290533 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAAT 409 |||||||||| | |||||| || | || |||||||||||| Sbjct 8290532 -----GTTCGACTTGTAAGTGTTAAGCATACCACCAGCGTTCAAT 8290493 Score = 77.0 bits (84), Expect = 8e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAG 147 ||||||||||||| |||||||||| | |||||||||||| |||||||||| ||| || Sbjct 15960545 CGTAGGAGTCTGGGCCGTGTCTCAATCCCAGTGTGGCTGATCATCCTCTCGGACTAG 15960489 Score = 73.4 bits (80), Expect = 1e-10 Identities = 55/65 (85%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 23 TCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTG 82 |||||| |||||| || |||| ||| ||||| |||||||||| ||| ||||||||||| Sbjct 39523139 TCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTG 39523198 Query 83 CTGCC 87 ||||| Sbjct 39523199 CTGCC 39523203 >seq2 Length=61504503 Score = 181 bits (200), Expect = 3e-43 Identities = 139/165 (84%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 |||| ||||| ||| | ||| |||| ||||||||||| || ||||||||||||||||||| Sbjct 28199013 CACGTGGCATTGCTCCGTCACGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCC 28198954 Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 | ||||||||||| |||||||||||| ||| ||||||| |||||||||| ||||||||| Sbjct 28198953 CATAGGAGTCTGGGCCGTGTCTCAGTCCCAACGTGGCTGATCATCCTCTCGGACCAGCTA 28198894 Query 151 GGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||| |||||| ||| || ||| || | |||||||| ||||| Sbjct 28198893 CTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGGTAATC 28198849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222299909888