Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1 333 8e-89 seq2 260 4e-67 seq4 91.5 4e-16 >seq1 Length=61571842 Score = 333 bits (368), Expect = 8e-89 Identities = 281/343 (82%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 35822266 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 35822325 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| | | |||||||||||| ||| ||||||||||||||||| Sbjct 35822326 CCGAGAGGATGATCAGCCACACTAGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 35822385 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||||||||||||||| ||||| |||||||| | || Sbjct 35822386 CAGTGGGGAATTTTCCGCAATGGGCAAAAGCCTGATGGAGCAATGCCGCGTGGAGGTGGA 35822445 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGG 397 |||||| |||||||| || ||| | ||| |||| | |||||||||| |||||| Sbjct 35822446 AGGCCTACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAAT 35822505 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||||||||||| |||||| || ||| || ||||||||||| Sbjct 35822506 AAGCATCGGCTAACTTTGTGCCAGCAGCCACGGTAAGACAGAGGATGCAAGCGTTATCCG 35822565 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || | ||||| Sbjct 35822566 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 35822607 Score = 257 bits (284), Expect = 5e-66 Identities = 265/343 (77%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 || ||||||||||||||||||||||| | | |||||||||||| | ||||||| Sbjct 8290670 CGTGTCTGATTAGCTAGTTGGTAAGGCAGTAGGTTACCAAGGCGATGG-CAGTAGCTAGT 8290728 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | ||||| ||||| |||||| ||| |||||||||||||||||||||||| | |||||| Sbjct 8290729 CCGAGAGAATGATCAGCCACACTGGGACTGAGACACGGTCCAAACTCCTATGAGAGGCAA 8290788 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||| || | |||||||| ||||| ||| | ||||| ||||| || | || Sbjct 8290789 GGGTGGGGAATTTTCCGCAATGGGCGAAAGCTTGACGGAGCAATGCCGCATGGAAGTGGA 8290848 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGG 397 |||||| |||| || || ||| | ||| |||| | ||||| |||| |||||| Sbjct 8290849 AGGCCTATGGGTTGTCAACTTCTTTTCTCGGAGAAGAAACAATGATGGTATCTGAGGAAT 8290908 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 || | ||||||||| |||||||||||||| | || || ||| || ||||||||||| Sbjct 8290909 AACCATCGGCTAACTCTGTGCCAGCAGCCGCAGCAAGACAGAGGATGCAAGCGTTATCCG 8290968 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || ||||||||| || | ||||| Sbjct 8290969 GAATGA-TTGGGCGTAAAGCGTACGTAGGTGGCTTTTCAAGTC 8291010 >seq2 Length=61504503 Score = 260 bits (288), Expect = 4e-67 Identities = 266/343 (78%), Gaps = 7/343 (2%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||| ||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 28198842 CGCGTCTGATTACCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 28198901 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| ||||| |||| |||||||||||| ||| ||||||| ||||||||| Sbjct 28198902 CCGAGAGGATGATCAGCCACGTTGGGACTGAGACACGGCCCAGACTCCTATGGGAGGCAG 28198961 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || |||||||||| ||||| ||| | ||||| ||| |||| || | Sbjct 28198962 CAGTGGGGAATTTTCCACAATGGGCGAAAGCGTGACGGAGCAATGCCACGTG---GA-GG 28199017 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGG 397 ||||| ||||||| || ||| | || |||| | ||||| |||| ||||||| Sbjct 28199018 TGGCCTATGGGTCGTCAACTTCTTTTCTTGGAGAAGAAACAATGATGGTATTTGAGGAAT 28199077 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||||| | | ||||||| | ||| || || |||||||| Sbjct 28199078 AAGCATCGGCTAACTCTATGCCAGGATCTGCGGTAAGATAGAGGATGCAAGTGTTATCCG 28199137 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| | | |||| ||||| || |||||||| || | |||| Sbjct 28199138 GAACGA-TTGGGCATAAAGCGTCTGTAGGTGGGTTTTCTAGTC 28199179 >seq4 Length=49548238 Score = 91.5 bits (100), Expect = 4e-16 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 324 GCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATA--ATG 381 |||||||| | |||||||| |||||||| || ||| | ||| ||||| | ||| Sbjct 17670084 GCCGCGTGGAGGCGGAAGGCCTACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATG 17670143 Query 382 ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 441 | |||| |||||| |||| ||||||||| ||||||||||||||||||| || ||| Sbjct 17670144 ATGGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGG 17670203 Query 442 GGGCTAGCGTTA 453 || ||||||| Sbjct 17670204 ATGCAAGCGTTA 17670215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497477376512