Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq1 232 2e-58 seq2 123 6e-26 >seq1 Length=61571842 Score = 232 bits (256), Expect = 2e-58 Identities = 257/343 (75%), Gaps = 0/343 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| |||||||||||| |||||| || ||| || ||| Sbjct 35822498 TGAGGAATAAGCATCGGCTAACTTTGTGCCAGCAGCCACGGTAAGACAGAGGATGCAAGC 35822557 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 35822558 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 35822617 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | | | |||| | | ||||||| Sbjct 35822618 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGTTGGAGTACGGTAGGGGCA 35822677 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| || ||| || |||||||||| | || || | |||||||| || ||| Sbjct 35822678 GAGGGAATTTCTGGTGGAGTGGTGAAATGCATTGAGATCGAAAAGAACACCAACGGTGAA 35822737 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||||| | |||||||||||| ||||||| |||||||||| ||||| Sbjct 35822738 AGCACTCTGCTGGACCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATT 35822797 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTG 347 ||| |||| ||||||| |||||||||| || |||||||||| Sbjct 35822798 AGAGACCCCAGTAGTCCTAGCCGTAAACGTTGGATACTAGGTG 35822840 Score = 159 bits (176), Expect = 8e-37 Identities = 281/408 (69%), Gaps = 1/408 (0%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 || |||||| |||| | ||||||| ||||||||||||| |||| | |||| || Sbjct 43626874 ACCTGAGGAATAAGCATCAGCTAACTCTGTGCCAGCAGCCGTTGTAAGATAGAGGGTGCA 43626815 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || |||||| |||| | ||||||| ||| | |||||||| || | || || | | Sbjct 43626814 AGTGTTATCTTGAATGATTGGGCGTGAAGCATCTGTAGGTGGCTTTTCAAATCCGCCGAC 43626755 Query 122 AAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGG 181 ||| | | | |||||||| | || | |||||| | ||| |||| ||| |||| Sbjct 43626754 AAATCCCAGGACTCAACCCTAGACAGGCGGTGGAAACTACCAAGCTGGAGTACAGTAGGG 43626695 Query 182 GCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGC 241 | | | |||| || ||| |||| |||||||| | || ||| | | |||||||| || Sbjct 43626694 GTAGAGGAAATTTCTGGTGGAGCGATGAAATGCATTGAGATTGGAAAGAACACCAACGGT 43626635 Query 242 GAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGG 301 ||| || |||||| ||| || ||||||| |||||| |||||| ||| || Sbjct 43626634 GAAAGCACTCTGCTGGGCTGACACCAACACTGAAAGATGAAAGCTAGGGGAGAAAATGGG 43626575 Query 302 ATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAG 361 |||||| ||| |||||| ||||||| |||| |||| |||||| | | | | Sbjct 43626574 ATTAGAGTCCCCAATAGTCCTACCCGTAAATGATGGATACCAGGTGTTGTGTGACTCGAC 43626515 Query 362 TGCTCCGGTGCCGCAGCAAACGCAATAA-GTATTCCACCTGGGGAGTA 408 | |||| | ||| |||||| ||| |||| |||||| ||||||| Sbjct 43626514 CCGTGTAGTGCTGTAGCTAACGCATTAAGGTATCCCACCTAGGGAGTA 43626467 Score = 107 bits (118), Expect = 5e-21 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| || | ||||||||| |||||||||||||| | || || ||| || ||| Sbjct 8290901 TGAGGAATAACCATCGGCTAACTCTGTGCCAGCAGCCGCAGCAAGACAGAGGATGCAAGC 8290960 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || ||||||||| || | ||||| | || ||| Sbjct 8290961 GTTATCCGGAATGATTGGGCGTAAAGCGTACGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 8291020 Query 125 GGCTATGGCTCAAC 138 | | |||||||| Sbjct 8291021 TTCCAGGGCTCAAC 8291034 >seq2 Length=61504503 Score = 123 bits (136), Expect = 6e-26 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 205 GGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAA 264 |||||||| ||||||| | | |||||| ||| |||||||| ||| |||| | Sbjct 5325209 GGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTA 5325268 Query 265 CTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACG 324 | ||| ||| || ||||||| |||||||| ||||||||||||||||||||||||||| | Sbjct 5325269 CCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATG 5325328 Query 325 CCGTAAACGATGA 337 ||||||||||||| Sbjct 5325329 CCGTAAACGATGA 5325341 Score = 113 bits (124), Expect = 1e-22 Identities = 190/275 (69%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 || ||||||| |||| ||||||||| |||||| | | ||||||| | ||| || Sbjct 28199066 TATTTGAGGAATAAGCATCGGCTAACTCTATGCCAGGATCTGCGGTAAGATAGAGGATGC 28199125 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 || ||||||||||| | ||||| ||||| || |||||||| || | |||| | || Sbjct 28199126 AAGTGTTATCCGGAACGATTGGGCATAAAGCGTCTGTAGGTGGGTTTTCTAGTCCGCCGT 28199185 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 ||| ||| |||||||||| | || | |||||| | ||| |||| | ||| Sbjct 28199186 CAAATCCTAGGGCTCAACCCTGCACAAGCGGTAGAAACTACCAAGCTGGAGTATGGTAGG 28199245 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 |||| |||||| | ||| || || |||||| | || || | | ||||| || || Sbjct 28199246 GGCAGAGGGAATTTCCTGTGGAGTGGAGAAATGAATTGAGATAGGAAAGAACAGCAACGG 28199305 Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAG 275 |||| || || || ||| |||||||||||| Sbjct 28199306 CGAAAGCACTCTGACGGGCTGACACTGACACTGAG 28199340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203101481984