Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq7 113 2e-22 seq1 111 5e-22 seq9 102 3e-19 seq5 96.9 1e-17 >seq7 Length=46770411 Score = 113 bits (124), Expect = 2e-22 Identities = 371/568 (65%), Gaps = 48/568 (8%) Strand=Plus/Plus Query 13 AGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAA 72 ||||||| ||| || | | ||||| || | | |||||||| ||||| |||||||||| Sbjct 43946900 AGGGCGATTGTCATTGCTTATGGACCCAAACCTAGGTGATCTATCCATGACCAGGATGAA 43946959 Query 73 GGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGC 132 | | | |||||||||||| ||| |||||||| ||| || |||||| Sbjct 43946960 GCTT-------------TAGAGGTCCGAACCGACTGATGTTGAAGAATCAGCAGATGAGT 43947006 Query 133 TGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTAT 192 ||||| ||||||||||| || | | ||| || |||| |||||| |||||| | Sbjct 43947007 TGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCAGGTTCTTCCCGAAATGCGT 43947066 Query 193 TTAGGTAGTGCCTCAAGTATCAC----CATCGGGG-GTAGAGCACTGTTATGGCTAGGGG 247 | ||| || ||| | || |||| || ||| ||||||||| || ||| Sbjct 43947067 TGAGGCGTAGC----AGT-TGACTGGACATCTAGGTGTAAAGCACTGTTTCGGTGCGGGC 43947121 Query 248 GTCATTGCGACT--TACCAAACCATTGCAAACTCCGAATGCGC-----------ATCAGT 294 | |||| | ||||||| | |||||||| |||| | | ||| Sbjct 43947122 TGC---GCGAGTGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGATCCAAACAGG 43947178 Query 295 TTT-ACCGCGGG--AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATC 351 | | | || |||||| ||||| | |||| | | | ||||||| || | | Sbjct 43947179 GGTCAAGGTTGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCC 43947238 Query 352 CGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCT 411 |||| | ||| ||||||||| |||||| ||| ||| | | || || || | ||| Sbjct 43947239 CGGATCACCAGTTAAGGCCCCTAAATGATCGCTCAGTGATA--AAGGAGGTGGGGGTGCA 43947296 Query 412 AAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCA 471 |||||||| || | ||| || | |||||||||| | ||||||||||| |||| |||| | Sbjct 43947297 AAGACAGCCAGAAGGTTTGCCTAGAAGCAGCCACCC-TTTAAAGAGTGTGTAATAGCTTA 43947355 Query 472 CTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGG 531 | ||||| | ||| || || | | || |||| ||| ||||||| ||| Sbjct 43947356 ATGATCGAGCGCCCTTGCGCTGAAGATGAACAGG-GCTAAGCGATCTGCCGAAGCTATGG 43947414 Query 532 GATCATTTATATG-ATCGGTAGGGGAGC 558 || | | ||| |||||||||||||| Sbjct 43947415 AAT-GTCAAAATGCATCGGTAGGGGAGC 43947441 >seq1 Length=61571842 Score = 111 bits (122), Expect = 5e-22 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||||| || ||| | | |||||||| | |||||||| ||||| Sbjct 20545888 CGAGTCTTCATAGGGCGATTATCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 20545829 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 | ||||||||| | | | | || |||||| |||| ||| |||||||||||| Sbjct 20545828 ACTAGGATGAAGCTTGGATGAAACTAAGCAAAGGTCCAAACCGACTGATGTTGAAAAATC 20545769 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || ||||| ||||||| Sbjct 20545768 AGTGGATGAGTTGTGGATAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTAGTTCTCT 20545709 Query 182 CCGAAA 187 |||||| Sbjct 20545708 CCGAAA 20545703 >seq9 Length=72259479 Score = 102 bits (112), Expect = 3e-19 Identities = 129/175 (74%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| || | ||||| | |||||| Sbjct 1674623 AGTGAGACGATGGGGGATAAGCTTCATCATCGAGAGGGAAACAGCCCGGATCACCAGCTA 1674564 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| ||||||| ||| ||| | | || || || | ||| ||||||| |||| Sbjct 1674563 AGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTGGGGGTGCAAAGACAGTCAGGAG 1674506 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||| || |||||||||| | |||||||||||||||| |||||||| ||||| Sbjct 1674505 GTTTGCCAAGAAGCAGCCA-CCCTTTAAAGAGTGCGTAATAGCTCACTGATCGAG 1674452 >seq5 Length=59822759 Score = 96.9 bits (106), Expect = 1e-17 Identities = 125/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 || |||||||| | ||||||||||| |||| ||||| | || ||||| | || | Sbjct 54655550 GATCCGAAACCGATCAATCTACCCATGAGCAGGTTGAAGAGAGCTCTAACAGATCTTGAA 54655491 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || | |||||||| |||| | ||||| |||||| | ||||| |||||||||||| | Sbjct 54655490 GGACAGAACCCACGTATGTGGCAAAATACGGGGATAACTTGTGGCTAGGGGTGAAAGACC 54655431 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 || || | ||| |||||||||| || |||| |||||| |||| || Sbjct 54655430 AACTAAGATAGGATATAGCTGGTTTTC-GTGAAATCTATTTTAGTAGAGC 54655382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689461655552