Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq1 122 2e-25 seq8 89.7 9e-16 >seq1 Length=61571842 Score = 122 bits (134), Expect = 2e-25 Identities = 178/247 (72%), Gaps = 16/247 (6%) Strand=Plus/Plus Query 9 TGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAA---GCTG 65 |||||||| ||| ||| | || ||| ||||| ||||| | |||| || ||| Sbjct 35828251 TGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAA---GCGACAAAATGCTT 35828307 Query 66 CGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTT 125 |||||||| | ||| | | | |||||| ||||| || ||| || |||| ||| Sbjct 35828308 CGGGGAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTT 35828361 Query 126 GGGTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCT 184 | | ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| Sbjct 35828362 ---TAACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCT 35828418 Query 185 AAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 |||||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| Sbjct 35828419 TAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGA 35828478 Query 245 TGAGCCT 251 ||||| Sbjct 35828479 GCAGCCT 35828485 Score = 105 bits (116), Expect = 1e-20 Identities = 171/243 (70%), Gaps = 10/243 (4%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || || ||||| ||||| | ||| | ||| ||| Sbjct 20546523 GGTGGATACCTAGGCACCCAGAGATGAGGAAGGGCGTAGCAAGCGACGAAATGCTTTGGG 20546464 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | ||||| ||||| || ||| || |||| ||| | Sbjct 20546463 GAGTT-GAAAATAAGCATAGATCCAGAGATTCCCAAATAGGTCAACCT-----TTT---T 20546413 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | | | |||||||| ||| | | |||| || ||| ||| ||||||||||||| ||| Sbjct 20546412 AACTACCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCAAACTGAAACATCTTAGT 20546353 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| |||||||||||||||||||||| || Sbjct 20546352 AGCAAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGTGGCGAGCGAAATGGGAGCAG 20546293 Query 249 CCT 251 ||| Sbjct 20546292 CCT 20546290 Score = 89.7 bits (98), Expect = 9e-16 Identities = 162/234 (69%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || || ||||| ||||| | ||| | ||| | || Sbjct 20545213 GGTGGATACCTAGGCACCCAGAGATGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCAGG 20545272 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| | ||| || ||| || |||| ||| | Sbjct 20545273 GAGTT-GAAAATAAGCATAGATCCGGACATTCCCAAATAGGTCAACCT-----TTT---T 20545323 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | | |||| || ||| ||| ||||||||||||| ||| Sbjct 20545324 AACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCAAACTGAAACATCTTAGT 20545383 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGG 242 ||| ||||||||||| ||| | ||||||| ||||| ||||||| ||| || Sbjct 20545384 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCAAAAGGG 20545437 >seq8 Length=47074253 Score = 89.7 bits (98), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 10/197 (5%) Strand=Plus/Minus Query 56 CGATAAGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAAC 115 ||| | ||| |||||||| | ||| | | | ||| || ||||| || ||| || ||| Sbjct 39229599 CGAAATGCTTCGGGGAGTT-GAAAATAAGCATAGATTCGGAGATTCCCAAATAGGTCAAC 39229541 Query 116 CCGGCCCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAAC 174 | ||| | | ||| |||||||| ||| | | |||| || ||| || |||| Sbjct 39229540 CT-----TTT---TAACTGCCTGCTGAATCCATGAGCAAGCAAGAGACAACCTGGAGAAC 39229489 Query 175 TGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAG 234 |||||||||| | || || ||||||||||| || | |||||| ||||| |||||| Sbjct 39229488 TGAAACATCTTATTAACTATAGGAAAAGAAAGAAAAAGCAATTCCCGTAGTAGCGGCGAG 39229429 Query 235 CGAAATGGGATGAGCCT 251 |||||||||| ||||| Sbjct 39229428 CGAAATGGGAGCAGCCT 39229412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918324801408