Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq8 129 2e-27 seq1 107 7e-21 seq7 104 8e-20 seq2 80.6 9e-13 >seq8 Length=47074253 Score = 129 bits (142), Expect = 2e-27 Identities = 108/130 (83%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||| | ||||||| | || |||||||||| |||||| ||||| Sbjct 5859976 ATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGTGGGTCG 5860034 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | Sbjct 5860035 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCA 5860094 Query 470 CTGGGGCTTC 479 |||||||| Sbjct 5860095 TCGGGGCTTC 5860104 Score = 111 bits (122), Expect = 5e-22 Identities = 144/198 (73%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299 ||||||||||||||||||| | || || | | |||||||||| ||||| | Sbjct 41820852 CTCCCACCTATCCTACACATTTGATCAAGGTTGTCACTGCGAAGCTATAGTCAAGGTGCA 41820911 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| ||| || | | | ||||||| || | | ||||||||||| Sbjct 41820912 CGGGGTCTTACTGTCTAGCTGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 41820971 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 || | || |||||||| ||| ||| ||||| |||||| ||||||||| ||||| | Sbjct 41820972 GGTCCATGTCGGAGACAGCGGGGCAGTTGTTACACCATTCATGCAGGTCGCTACTTATGC 41821031 Query 420 GACAAGGAATTTCGCTAC 437 |||||||||||||||||| Sbjct 41821032 GACAAGGAATTTCGCTAC 41821049 >seq1 Length=61571842 Score = 107 bits (118), Expect = 7e-21 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGG 447 |||||||| ||||| | ||||||||||||||||| || ||||||||||||||||||| | Sbjct 48278785 GTTACGCCTTTCGTACGGGTCGGAACTTACCCGATAAAGAATTTCGCTACCTTAGGACTG 48278844 Query 448 TTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 |||||||||| |||| ||| || ||| |||| Sbjct 48278845 TTATAGTTACGGCCGCTGTTCACCGGGTCTTC 48278876 Score = 77.0 bits (84), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| || ||||| |||||||||||||||| ||| || ||||| | ||| || | Sbjct 53560854 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATGTC 53560912 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | | | |||| |||||||| |||||||||||| |||||||||| | | ||||||| Sbjct 53560913 CGTTTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCA 53560971 Query 120 GTTAAACT 127 ||||| Sbjct 53560972 TAGAAACT 53560979 >seq7 Length=46770411 Score = 104 bits (114), Expect = 8e-20 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGG 447 ||||| || ||||||||||| ||||||||||||||||||||||| ||||| |||||| | Sbjct 15000721 GTTACACCTTTCGTGCAGGTTGGAACTTACCCGACAAGGAATTTTGCTACTTTAGGACCG 15000780 Query 448 TTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||| ||||| || || ||||||| Sbjct 15000781 TTATAGTTATGGCCGCCATTCACCAGGGCTTC 15000812 >seq2 Length=61504503 Score = 80.6 bits (88), Expect = 9e-13 Identities = 54/59 (92%), Gaps = 1/59 (2%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 444 |||||||| | ||||||| |||||||||||||| ||||||||| ||||||||||||||| Sbjct 3109601 TCGTTACGTCTTTCGTGCTGGTCGGAACTTACCTGACAAGGAA-TTCGCTACCTTAGGA 3109658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702260607488