Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq1 127 4e-27 seq2 89.7 1e-15 >seq1 Length=61571842 Score = 127 bits (140), Expect = 4e-27 Identities = 195/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| ||||||||||||||||||| | || ||| || | Sbjct 35822534 GGCTGCTGGCACAAAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 35822486 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||| ||| | | |||||||||| || | |||||| ||||| ||| ||||| Sbjct 35822485 G------TTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTAGG-CCTTCCACCTCCACGC 35822433 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || | | |||||| || ||||| |||||||||||||||||| Sbjct 35822432 GGCATTGCTCCATCAGGCTTTTGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 35822373 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| | | ||||| || | ||||||| || | ||| || Sbjct 35822372 GAGTCTGGGCCGTGTCTCAGTCCTAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 35822313 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 35822312 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 35822274 Score = 98.7 bits (108), Expect = 2e-18 Identities = 158/228 (69%), Gaps = 18/228 (8%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| ||||||||||||| |||||| | || ||| || | Sbjct 8290937 GGCTGCTGGCACAGAGTTAGCCGATGGTTATTCCTCAGATACCATCAT-----------T 8290889 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||| ||| | | |||||||||| |||| || ||| ||||| | | || || Sbjct 8290888 G------TTTCTTCTCCGAGAAAAGAAGTTGACAACCCATAGG-CCTTCCACTTCCATGC 8290836 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| ||| || ||| |||||| || ||||| ||| |||||| | ||| Sbjct 8290835 GGCATTGCTCCGTCAAGCTTTCGCCCATTGCGGAAAATTCCCCACCCTTGCCTCTCATAG 8290776 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||||||||||||||||||||| ||| ||||| || | | ||||| || Sbjct 8290775 GAGTTTGGACCGTGTCTCAGTCCCAGTGTGGCTGATCATTCTCTCGGA 8290728 >seq2 Length=61504503 Score = 89.7 bits (98), Expect = 1e-15 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 138 CTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCT 197 || ||| |||||| || ||||| |||||||||||||| ||||||| ||| |||||||| Sbjct 28198991 CTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCCCATAGGAGTCTGGGCCGTGTCT 28198932 Query 198 CAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCC 257 |||| |||| |||| || | ||||||| || | ||| ||| | | || ||| || Sbjct 28198931 CAGTCCCAACGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCT 28198872 Query 258 GTTACCCCGCCTACTACCTAAT 279 || || | || |||| |||| Sbjct 28198871 ATTGCCTCACCAACTAGGTAAT 28198850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068712486656