Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq432 104 4e-20 seq7 104 4e-20 seq5 104 4e-20 seq3565 95.1 2e-17 seq3 95.1 2e-17 seq4 89.7 8e-16 seq733 77.0 5e-12 seq6 73.4 6e-11 >seq432 Length=13724 Score = 104 bits (114), Expect = 4e-20 Identities = 97/121 (80%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 3760 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 3817 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | || |||||||| ||||||||||||||||||||||||| || | Sbjct 3818 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 3877 Query 121 G 121 | Sbjct 3878 G 3878 >seq7 Length=46770411 Score = 104 bits (114), Expect = 4e-20 Identities = 97/121 (80%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 1039287 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1039230 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | || |||||||| ||||||||||||||||||||||||| || | Sbjct 1039229 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 1039170 Query 121 G 121 | Sbjct 1039169 G 1039169 Score = 104 bits (114), Expect = 4e-20 Identities = 97/121 (80%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | || || ||| || |||| Sbjct 1865533 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCACGCTTGGTTGAAAAGCCAGT 1865476 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| || |||||||| ||||||||||||||||||||||||| || | Sbjct 1865475 GGCGCGAAGCTACCATGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 1865416 Query 121 G 121 | Sbjct 1865415 G 1865415 Score = 104 bits (114), Expect = 4e-20 Identities = 97/121 (80%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 4677116 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 4677173 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | || |||||||| ||||||||||||||||||||||||| || | Sbjct 4677174 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 4677233 Query 121 G 121 | Sbjct 4677234 G 4677234 Score = 95.1 bits (104), Expect = 2e-17 Identities = 95/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 1925933 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1925876 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||| |||||||| | || |||||||| |||||| |||||||||||||||||| || | Sbjct 1925875 GGCGCAAAGCTACCGTGTGTCGGATTATGACTGAACACCTCTAAGTCAGAATCCAAGCTA 1925816 Query 121 G 121 | Sbjct 1925815 G 1925815 Score = 95.1 bits (104), Expect = 2e-17 Identities = 95/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | || || ||| || |||| Sbjct 2186305 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCACGCTTGGTTGAAAAGCCAGT 2186362 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | || |||||||| || |||||||||||||||||||||| || | Sbjct 2186363 GGCGCGAAGCTACCGTGTGTCGGATTATGACTAAACGCCTCTAAGTCAGAATCCAAGCTA 2186422 Query 121 G 121 | Sbjct 2186423 G 2186423 Score = 89.7 bits (98), Expect = 8e-16 Identities = 94/121 (78%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 4683124 GTATGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 4683067 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | || ||||||||| | || |||||||| ||||||| ||||||||||||||||| || | Sbjct 4683066 GGCGTGAAGCTACCGTGTGTCGGATTATGACTGAACGTCTCTAAGTCAGAATCCAAGCTA 4683007 Query 121 G 121 | Sbjct 4683006 G 4683006 Score = 82.4 bits (90), Expect = 1e-13 Identities = 92/121 (76%), Gaps = 3/121 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||||| | ||||| | | ||||| | ||| || ||| || |||| Sbjct 2965446 GTACAAGAGGAACCTTG--ATTCACAC-AGTTGGTCATCGCGCTTGGTTGAAAAGCCAGT 2965390 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | || | |||||| |||||| |||||||||||||||||| || | Sbjct 2965389 GGCGCGAAGCTACCGTGTGTCGAATTATGACTGAACACCTCTAAGTCAGAATCCAAGCTA 2965330 Query 121 G 121 | Sbjct 2965329 G 2965329 >seq5 Length=59822759 Score = 104 bits (114), Expect = 4e-20 Identities = 97/121 (80%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 46893775 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 46893832 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | || |||||||| ||||||||||||||||||||||||| || | Sbjct 46893833 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 46893892 Query 121 G 121 | Sbjct 46893893 G 46893893 Score = 89.7 bits (98), Expect = 8e-16 Identities = 94/121 (78%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||||| || |||| | ||||||| | | | || ||| || |||| Sbjct 46974918 GTATGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGTGCTTGGTTGAAAAGCCAGT 46974975 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | || |||||||| ||||| ||||||||||||||||||| || | Sbjct 46974976 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAATGCCTCTAAGTCAGAATCCAAGCTA 46975035 Query 121 G 121 | Sbjct 46975036 G 46975036 >seq3565 Length=2154 Score = 95.1 bits (104), Expect = 2e-17 Identities = 95/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| ||||||| | ||| || ||| || |||| Sbjct 1212 GTACGAGAGGAACCGTTGA-TTCACGC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1269 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | || ||||||||| | || |||||||| ||||||||||||||||||||||||| || | Sbjct 1270 GGCGTGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 1329 Query 121 G 121 | Sbjct 1330 G 1330 >seq3 Length=64463019 Score = 95.1 bits (104), Expect = 2e-17 Identities = 95/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||| |||||||| || |||| | ||||||| | ||| || ||| || ||| Sbjct 19334798 GTACGATAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCTAGT 19334855 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | || |||||||| ||||||||||||||||||||||||| || | Sbjct 19334856 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCAA 19334915 Query 121 G 121 | Sbjct 19334916 G 19334916 Score = 86.0 bits (94), Expect = 1e-14 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 19320941 GTATGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGATTGAAAAGCCAGT 19320998 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | || |||||||| || ||||| | |||||||||||||| || | Sbjct 19320999 GGCGCGAAGCTACCGTGTGTCGGATTATGACTAAACGCTTATAAGTCAGAATCCAAGCTA 19321058 Query 121 G 121 | Sbjct 19321059 G 19321059 >seq4 Length=49548238 Score = 89.7 bits (98), Expect = 8e-16 Identities = 94/121 (78%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||| ||||| || |||| | ||||| | | ||| || ||| || |||| Sbjct 45114638 GTACGAGAGAAACCGTTGA-TTCACAC-AATTGATCATCGCGCTTGGTTGAAAAGCCAGT 45114581 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | |||||||||| | || |||||||| ||||||||||||||||||||||||| || | Sbjct 45114580 GGCACGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 45114521 Query 121 G 121 | Sbjct 45114520 G 45114520 >seq733 Length=9930 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || ||| ||| || | ||| |||| ||| | Sbjct 3793 GTACGAGAGGAACCGCAGG-TTCGGACAAAT-GGTACATGTGCCTGCTCGACCGAGCAAT 3736 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | ||| |||| | || | |||||||| |||||||||||||||||||||||| Sbjct 3735 GGCACGACGCTATCGTCCGAGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 3682 >seq6 Length=48101398 Score = 73.4 bits (80), Expect = 6e-11 Identities = 56/65 (86%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 58 AGTGCCGCGAAGCTACCATCTGCT-GGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116 |||| |||||||||||| | || | |||||||| ||||||||||||||||||| ||||| Sbjct 21941653 AGTGGCGCGAAGCTACCGTGTGTTCGGATTATGACTGAACGCCTCTAAGTCAGTATCCAA 21941594 Query 117 GCCAG 121 || || Sbjct 21941593 GCTAG 21941589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819135020032