Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq7 147 2e-30 seq4 145 6e-30 >seq7 Length=46770411 Score = 147 bits (162), Expect = 2e-30 Identities = 542/840 (65%), Gaps = 17/840 (2%) Strand=Plus/Minus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || ||||||||||||| |||||||| || | || ||| | Sbjct 35945171 TACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAGGAGGTGGACCTCTCGGCCGACGCG 35945112 Query 61159 AATGACTGGGA-GCGTT--TATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 ||||||| ||| | || || || | || ||||| || ||| | || Sbjct 35945111 CGCCACTGGGACGCGGCGCTCTCCCCCGACGAGCGCCACTTCATCTCCCACGTGCTCGCC 35945052 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| ||||| || ||||| ||||| ||||| | || ||| | || Sbjct 35945051 TTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCCGCTTCATGTCCGAC 35944992 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 ||||| || |||||||||| ||||||||||||||||| ||||| ||||| ||||| Sbjct 35944991 GTGCAGGTCGCGGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCAC 35944932 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA 61395 |||||||||||| | || | || || |||||| | || | || || || || Sbjct 35944931 TCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGGCGCCGAGAAGGACCGC 35944872 Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 | ||| |||||||| || | || || ||| || || || || |||||| | Sbjct 35944871 CTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGC 35944812 Query 61456 TGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 |||||| || ||| | || | || || | | || || || |||| Sbjct 35944811 TGGATC-----GACGGCGGGGAGCGCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCG 35944757 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 |||| | || ||| || || || ||| ||||| ||| | ||||| || || || | Sbjct 35944756 AGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCA 35944697 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| ||||| |||||| ||| ||| | || || |||||||||||| | || || || | Sbjct 35944696 TGCCGGGTCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACT 35944637 Query 61634 TTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTG 61693 | || | || | | | | | || | | | | || | |||| || || | | Sbjct 35944636 TCGCCTGCCTCCTCTACGATCTC-CTCCGCGGCA-AGCTCGAC-GAGGGCCGCGTCCGCG 35944580 Query 61694 AGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGCCCGT 61751 |||| || || || || ||||| | || || |||| ||||| | ||||| Sbjct 35944579 AGATCGTCGCCGACGCCGTCGACATCGAGCGCGAGTTCGTCTG--CGACGCGCTCCCCGT 35944522 Query 61752 CTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCG 61811 | | ||| |||| ||||| | || || ||| ||||| || || || || |||||||| Sbjct 35944521 CGCGCTCGTCGGAATGAACGGCGGCCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCG 35944462 Query 61812 TCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCAT 61871 ||| | | | |||| ||| ||| ||||| ||||| || || | || Sbjct 35944461 CCTGCTCATGGCGCTGGGCCACAAGAAGATGTATAACGTCGCCAACCCCTTCGACTGGAT 35944402 Query 61872 GGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||| | || |||||| | |||||||| || || |||||||| || || || || || || Sbjct 35944401 GGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGGGAGTACCA 35944342 >seq4 Length=49548238 Score = 145 bits (160), Expect = 6e-30 Identities = 548/846 (65%), Gaps = 29/846 (3%) Strand=Plus/Minus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || ||||||||||||| |||||||| || | ||| ||| | Sbjct 42842800 TACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAGGAGGTGGACCTCTCCGCCGACGCG 42842741 Query 61159 AATGACTGGGA----GCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 ||||||| ||| | || || || | || ||| | || ||| | || Sbjct 42842740 CGGCACTGGGACGAGGCGCTG-TCCCCCGACGAGCGCCACTTCGTCTCCCACGTGCTCGC 42842682 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTA--TTGGAACGTTTCGCGCAG 61272 ||||| ||||| || ||||| ||||| ||||| | || | || ||| | Sbjct 42842681 CTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCTTCG--CGCTTCATGTCC 42842624 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 || ||||| || | |||||||| ||||||||||||||||| ||||| ||||| || Sbjct 42842623 GACGTGCAGGTCGCCGAGGCGCGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATC 42842564 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA 61392 ||||||||||||||| | || |||| || |||||| | || | || || || Sbjct 42842563 CACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCCGAGAAGGAC 42842504 Query 61393 CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTC 61452 || | ||| |||||||| || | || || || || || || || |||||| | Sbjct 42842503 CGCCTCTTCCGCGCCATCGACACCGTGCCCGCCGTCCGCCGCAAGGCCGACTGGGCCATG 42842444 Query 61453 AATTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGTGG 61510 |||||| || |||| | || | || || | | || || || | Sbjct 42842443 CGCTGGATC-----GACGGCGGCGAGCGCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCG 42842389 Query 61511 TCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGAC 61570 | ||||| | || ||| || || || ||| ||||| ||| | ||||| || || | Sbjct 42842388 TTGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCC 42842329 Query 61571 TTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTG 61630 | ||||| || || |||||| ||| ||| | || || |||||||||||| |||| || | Sbjct 42842328 TCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCG 42842269 Query 61631 ATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGG 61690 | || || | || | | | | | || | | | | || | |||| || || Sbjct 42842268 ACTTCGCCTGCCTCCTCTACGACCTC-CTCCGCAGCA-AGCTCGAC-GAGGCCCGCGTCC 42842212 Query 61691 GTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGCC 61748 | ||||| || || || || ||||| | || || |||| ||||| | || Sbjct 42842211 GCGAGATCGTCGCCGACGCCGTCGACATCGAGCGCGAGTTCGTCTG--CGACGCGCTCCC 42842154 Query 61749 CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808 |||| | ||| |||||||||| | | || ||| ||||| || || || || ||||| Sbjct 42842153 CGTCGCGCTCGTCGGCATGAACGGCGCCCTCATGAGCCAGTACATCGAGTTCGTCGCCGA 42842094 Query 61809 CCGTCTGTT--GGTCGATTTGG-GTATGAAGCGGATCTATAATACGAAAAACCCATTTGA 61865 ||| ||| | | || | || | | ||| ||| || || | ||||| || || Sbjct 42842093 CCGCCTGCTCATGGCGCTCGGGTGCAGGAA---GATGTACAACGCCGCCAACCCCTTCGA 42842037 Query 61866 TTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGA 61925 | ||||| | || |||||| | |||||||| || || |||||||| || || ||||| Sbjct 42842036 CTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGA 42841977 Query 61926 CTATCA 61931 ||| || Sbjct 42841976 CTACCA 42841971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397528326192320