Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq2 241 1e-58 seq4 159 4e-34 seq8 98.7 1e-15 >seq2 Length=61504503 Score = 241 bits (266), Expect = 1e-58 Identities = 311/427 (73%), Gaps = 2/427 (0%) Strand=Plus/Minus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 2078343 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 2078284 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921 |||||||| || | ||| | |||||| |||| || || |||| ||||||||||| || Sbjct 2078283 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 2078225 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 || || || || ||||| || ||||| || || ||||||| | | || || ||||| Sbjct 2078224 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 2078165 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041 || ||||||||||| || |||| |||| || || || | ||||| || || || Sbjct 2078164 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 2078105 Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGT 160101 ||||||||| ||||| | || |||||| | || || || || |||| | || | || Sbjct 2078104 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 2078045 Query 160102 CTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 160161 | |||||| | | || | | ||||||||||||||||||||||| || ||| Sbjct 2078044 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 2077985 Query 160162 TCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGC 160221 ||| ||||||||||| ||||| ||||||||| || ||||| || || |||||| |||| Sbjct 2077984 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 2077925 Query 160222 TGTATTC 160228 ||| ||| Sbjct 2077924 TGTTTTC 2077918 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/151 (75%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 161527 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 161586 ||||||||| | | | || |||||||||||| | || ||||| || || | || ||| Sbjct 2076801 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGCCTATTGCTCTTT 2076860 Query 161587 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGG 161646 || ||||||| | ||| | || |||||| |||| || || ||||| | || ||| Sbjct 2076861 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 2076920 Query 161647 TATACCCATGGACTCGCTAGTTCCT-ATCTT 161676 |||||||||||| | |||||||||| ||||| Sbjct 2076921 TATACCCATGGATTGGCTAGTTCCTAATCTT 2076951 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 160960 GATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGT 161019 |||||| || |||| || ||||||| || || || || || ||||| || Sbjct 5809828 GATGATACTTACATCCTGGAGTCTGCTGAATCCGCTGGAGTGGAGCTGCCGTACTCGTGC 5809769 Query 161020 CGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCT 161079 |||||||| ||||||||||| || ||||| || |||||| |||| | || ||||| || Sbjct 5809768 CGTGCTGGCGCTTGCTCTACCTGCGCTGGCAAAATTGAGGGTGGCATCGTCGATCAGTCA 5809709 Query 161080 GATCAATCTTTCCTGGATGATG 161101 ||| ||| ||||| ||||||| Sbjct 5809708 GATGGATCATTCCTTGATGATG 5809687 >seq4 Length=49548238 Score = 159 bits (176), Expect = 4e-34 Identities = 227/318 (71%), Gaps = 1/318 (0%) Strand=Plus/Plus Query 159957 CTGGTTCACTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACG 160016 ||||||| | | || || ||||| || ||||||||||| || |||| |||| | Sbjct 24272523 CTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAG 24272582 Query 160017 CAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATA 160076 | || || | ||||| || || ||||||||||| ||||| | || |||||| | || | Sbjct 24272583 CGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACA 24272642 Query 160077 ACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGG 160136 | || || |||| | || | || | |||||| | | || | | ||||||| Sbjct 24272643 ATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGG 24272702 Query 160137 GTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACT 160196 ||| |||||||||||| || |||||| ||||||||||| ||||| ||||||||| | Sbjct 24272703 GTCATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 24272762 Query 160197 CTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTT 160256 | ||||| || || |||||| ||||||| ||| | | |||| | ||||| || || Sbjct 24272763 CAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTT 24272822 Query 160257 TCTCCGATGCTAT-GCCT 160273 | || |||||||| |||| Sbjct 24272823 TTTCTGATGCTATAGCCT 24272840 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 161527 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 161586 ||||||||| | | | || | |||||||||| | || ||||| || || | || ||| Sbjct 21863108 GACGACTGGTTACGAAGGGACCTTTTCGTTTTTATAGGATGGTCCGGCCTATTGCTCTTT 21863049 Query 161587 CCCACTGCTTATCTTGCTATT-GGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTG 161645 || ||||||| | ||| | || |||||| |||| || || ||||| | || || Sbjct 21863048 CCTTGTGCTTATTTCGCTTTAAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTG 21862989 Query 161646 GTATACCCATGGACTCGCTAGTTCCT-ATCTT 161676 ||||||||||||| | |||||||||| ||||| Sbjct 21862988 GTATACCCATGGATTGGCTAGTTCCTAATCTT 21862957 >seq8 Length=47074253 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 ||||| | ||| ||| | ||| | ||||| || || |||| ||||| || || || Sbjct 5860715 TTCTGTAACTGGATAAGTAGCACCGAAAACCGTCTTTACATCGGATGGTTAGGTGTTTTG 5860656 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCCC 159922 |||||||| || | ||| | |||||| | || || ||||||||||||||||||| Sbjct 5860655 ATGATCCCTACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCCT 5860596 Query 159923 CCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAAC 159982 || || || || ||||| || ||||| || || |||||| | | || || || || Sbjct 5860595 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTTACTTTATGGAAATAAT 5860536 Query 159983 ATCATCTCTGGTGC 159996 || |||||||||| Sbjct 5860535 ATTGTCTCTGGTGC 5860522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551319566666400