Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq2 224 1e-53 seq4 152 7e-32 seq8 100 4e-16 >seq2 Length=61504503 Score = 224 bits (248), Expect = 1e-53 Identities = 325/448 (73%), Gaps = 17/448 (4%) Strand=Plus/Minus Query 188878 AACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-CTGCAAC 188936 |||||||| || |||| ||||||||||| ||||||||||||| ||| | | | ||||| Sbjct 2078316 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAAC 2078258 Query 188937 CATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCG 188995 |||| || || |||| || ||||||| || || ||||| |||||||| || || | Sbjct 2078257 T-TCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTG 2078199 Query 188996 AACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTT 189055 | || || ||||||| | | ||||||||||| || ||||||||||| || | ||| Sbjct 2078198 AGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTA 2078139 Query 189056 CATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGT 189115 | || || || || | ||||| ||||| || |||||||| || || | ||||||| Sbjct 2078138 CTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGT 2078079 Query 189116 GGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACG 189175 || | ||||| || || |||| | || | || | |||||| | | || | || | Sbjct 2078078 GGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-G 2078022 Query 189176 C---CTACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCT 189232 | || |||||||||||||||||||| || |||||| ||||||||||||||||| | Sbjct 2078021 CTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT-T 2077963 Query 189233 GC-ATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGT-----CTATC 189286 || |||| || || || ||||||||||| || | || || || || | |||| Sbjct 2077962 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATT 2077903 Query 189287 CTTTTGGTCAAGGTTCTTTCTCTGACGC 189314 || |||||||||| ||| ||||| || Sbjct 2077902 CTATTGGTCAAGGAAGTTTTTCTGATGC 2077875 >seq4 Length=49548238 Score = 152 bits (168), Expect = 7e-32 Identities = 231/323 (72%), Gaps = 8/323 (2%) Strand=Plus/Plus Query 189005 CTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACG 189064 ||||||| | | ||||||||||| || ||||||||||| || | ||| | || | Sbjct 24272523 CTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAG 24272582 Query 189065 CAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACA 189124 | || || | ||||| ||||| || |||||||| || || | ||||||||| | |||| Sbjct 24272583 CGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACA 24272642 Query 189125 ACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGCCT---ACA 189181 | || || |||| | || | || | |||||| | | || | || || | | | Sbjct 24272643 ATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-GCTTGTTATA 24272699 Query 189182 TGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGC-ATTGCT 189240 |||||| |||||||||||| || |||||| ||||||||||||||||| ||| |||| Sbjct 24272700 TGGGTCATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCA 24272758 Query 189241 TACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGT 189300 || || || ||||||||||| || | || || || || | | ||| |||||||||| Sbjct 24272759 TATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGA 24272818 Query 189301 TCTTTCTCTGACGCAATGCCCTT 189323 ||| ||||| || || |||| Sbjct 24272819 AGTTTTTCTGATGCTATAGCCTT 24272841 >seq8 Length=47074253 Score = 100 bits (110), Expect = 4e-16 Identities = 127/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 188878 AACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-CTGCAAC 188936 |||||||| || |||| ||||| ||||| ||||||||||||| ||| | | | ||||| Sbjct 5860688 AACCGTCTTTACATCGGATGGTTAGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAAC 5860630 Query 188937 CATCTGCTTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCGA 188996 | || || ||||||| ||||||| || || ||||| |||||||| || || || Sbjct 5860629 TTCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 5860570 Query 188997 ACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTT 189048 || || |||||| | | |||||||| || || ||||||||||| || Sbjct 5860569 GCCTGTTTTTGGTTCTTTACTTTATGGAAATAATATTGTCTCTGGTGCTATT 5860518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634015101912000