Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2 361 8e-98 seq61 291 1e-76 seq240 260 2e-67 seq54 208 1e-51 seq140 154 2e-35 seq1013 123 4e-26 >seq2 Length=81761211 Score = 361 bits (400), Expect = 8e-98 Identities = 238/258 (92%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||| |||||||||||||| | |||||||||||||||||||||||| | Sbjct 18227958 GTACAAAGGGCAGGGATGTAGTCAACGCGAGAT-GATGACTCGCGCTTACTAGGAATT-C 18228015 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT--CAAAGAT 118 ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| Sbjct 18228016 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACAATGAAATTTTCCAAAGAT 18228075 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| |||| Sbjct 18228076 TACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGCGCGTGTGC 18228135 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 |||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||| Sbjct 18228136 GGCCCAGAACATCTAAGGACATCACAGATCTGTTATTGCCTCAAACTTACGTGGCCTAAA 18228195 Query 239 AGGCCAT-CTCCCTCGAA 255 || ||| |||||| || Sbjct 18228196 CGGTCATAGTCCCTCTAA 18228213 Score = 257 bits (284), Expect = 3e-66 Identities = 202/241 (84%), Gaps = 23/241 (10%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| ||||||| ||||||| | Sbjct 16205093 GTACAAAGGGCAGGGACGTATTCAACGCAAGCT-GATGACTTACGCTTACAAGGAATT-C 16205150 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCA-----------TCACGATGAAAT 109 ||||||||||| ||| |||||||||| |||||||||| |||||||||||| Sbjct 16205151 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTCACGATGAAAT 16205210 Query 110 TTC--AAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGT 167 || ||||||||| ||| ||||||| ||| ||| ||||||||||||||| | Sbjct 16205211 TTTCTAAAGATTACTCGG--------GCCAAGGCTATATACTTGTTGAATACATCAGTTT 16205262 Query 168 AGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 16205263 AGCGCGCGTGCGGCCCAAAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 16205322 Query 228 C 228 | Sbjct 16205323 C 16205323 Score = 141 bits (156), Expect = 1e-31 Identities = 93/100 (93%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||| ||||| | |||||||| | ||||||||||||| | Sbjct 19223571 GTACAAAGGGCAGGGACGTAGTCAATGCGAG-TCGATGACTCACACTTACTAGGAATT-C 19223628 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCA 100 ||| |||||||||||||||||||||||||||||||||||| Sbjct 19223629 CTCATTGAAGACCAACAATTGCAATGATCTATCCCCATCA 19223668 Score = 109 bits (120), Expect = 8e-22 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 172 CGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 || |||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| Sbjct 18228351 CGTGTGCGGCCCAGAACATCTAAGGACATCACAGATCTGTTATTGCCTCAAACTTACGTG 18228410 Query 232 GCCTAAAAGGCCAT-CTCCCTCGAA 255 ||||||| || ||| |||||| || Sbjct 18228411 GCCTAAACGGTCATAGTCCCTCTAA 18228435 >seq61 Length=1846253 Score = 291 bits (322), Expect = 1e-76 Identities = 215/247 (87%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| || |||||||||| ||||| ||||||||| |||||||||||||| | Sbjct 1314745 GTACAAAGGGCATAGAAGTAGTCAACGTGAGCT-GATGACTCGTGCTTACTAGGAATT-C 1314688 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTC--AAAGAT 118 ||||||||||| ||||||||| |||||||||||||||||| |||||||||| |||||| Sbjct 1314687 CTCGTTGAAGATCAACAATTGTAATGATCTATCCCCATCATGATGAAATTTTTTAAAGAT 1314628 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| |||||| |||||| ||| ||| |||||||||| |||| |||| ||||| Sbjct 1314627 TACTCGGGTCTGTCGACCAAGGCTATATGCTCTTTGAATACATTTGTGTGGCGCACGTGC 1314568 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 |||||| ||| |||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 1314567 GGCCCAAAACCTCTAAGGGCATCACAGACCTGTTATTGCCTCAAAATTCCGTTGCCTAAA 1314508 Query 239 AGGCCAT 245 | |||| Sbjct 1314507 TGACCAT 1314501 >seq240 Length=3221721 Score = 260 bits (288), Expect = 2e-67 Identities = 193/223 (87%), Gaps = 12/223 (5%) Strand=Plus/Plus Query 36 ATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCC 95 ||||||||||||||||| ||||||| |||||||| |||||||||||||||||| |||||| Sbjct 2362552 ATGACTCGCGCTTACTAAGAATTTC-TCGTTGAAAACCAACAATTGCAATGATTTATCCC 2362610 Query 96 CATCACGATGAAATTTC--AAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTT 153 |||||||||||||||| ||||||||| ||| ||||||| ||| ||| ||| Sbjct 2362611 CATCACGATGAAATTTTCTAAAGATTACTCGG--------GCCAAGGCTATATACTTGTT 2362662 Query 154 GAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTA 213 |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2362663 GAATACATCAGTTTAGCGCGCGTGCGGCCCAAAACATCTAAGGGCATCACAGACCTGTTA 2362722 Query 214 TTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 ||||||||||||| | ||| ||||| | |||| |||||| || Sbjct 2362723 TTGCCTCAAACTTTCATGGTCTAAACGACCATAGTCCCTCCAA 2362765 >seq54 Length=3706658 Score = 208 bits (230), Expect = 1e-51 Identities = 205/258 (79%), Gaps = 5/258 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| |||||| |||||||| | || | ||| ||| | || | |||||||| | Sbjct 298800 GTACAAAGGAGAGGGACATAGTCAACACAAGAT-GATTACTTGTGCATGGTAGGAATT-C 298743 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAA-TTTC-AAAGAT 118 |||||| || |||||||||| |||| ||||||| ||||| ||||||| |||| |||||| Sbjct 298742 CTCGTTTAAAACCAACAATTTCAATCATCTATCGTCATCATGATGAAAATTTCTAAAGAT 298683 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 || ||| |||||| |||||| ||| ||| || ||||||| ||| | || ||||||| Sbjct 298682 TAACCGAGTCTGTCGACCAAGGCTATATACTATTTAAATACATTAGTATTGCACGCGTGC 298623 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 | ||||||||||||||| ||||||| || | |||||| |||||||||| | ||| |||| Sbjct 298622 GACCCAGAACATCTAAGTACATCACAAACTTATTATTGACTCAAACTTCTGAGGCATAAA 298563 Query 239 AGGCCAT-CTCCCTCGAA 255 | |||| |||||| || Sbjct 298562 TGACCATAGTCCCTCTAA 298545 Score = 208 bits (230), Expect = 1e-51 Identities = 205/258 (79%), Gaps = 5/258 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| |||||| |||||||| | || | ||| ||| | || | |||||||| | Sbjct 309398 GTACAAAGGAGAGGGACATAGTCAACACAAGAT-GATTACTTGTGCATGGTAGGAATT-C 309341 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAA-TTTC-AAAGAT 118 |||||| || |||||||||| |||| ||||||| ||||| ||||||| |||| |||||| Sbjct 309340 CTCGTTTAAAACCAACAATTTCAATCATCTATCGTCATCATGATGAAAATTTCTAAAGAT 309281 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 || ||| |||||| |||||| ||| ||| || ||||||| ||| | || ||||||| Sbjct 309280 TAACCGAGTCTGTCGACCAAGGCTATATACTATTTAAATACATTAGTATTGCACGCGTGC 309221 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 | ||||||||||||||| ||||||| || | |||||| |||||||||| | ||| |||| Sbjct 309220 GACCCAGAACATCTAAGTACATCACAAACTTATTATTGACTCAAACTTCTGAGGCATAAA 309161 Query 239 AGGCCAT-CTCCCTCGAA 255 | |||| |||||| || Sbjct 309160 TGACCATAGTCCCTCTAA 309143 >seq140 Length=1825301 Score = 154 bits (170), Expect = 2e-35 Identities = 186/248 (75%), Gaps = 5/248 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| | || ||| | |||||||| |||| |||||||| ||||||||| |||| | Sbjct 535963 GTACAAAAGATAGAGACATTGTCAACGCAAGCT-GATGACTCATGCTTACTAGAAATT-C 535906 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTC--AAAGAT 118 || || || |||| || ||||||||| |||| | ||||| ||||||||| |||||| Sbjct 535905 CTTATTAAATGCCAAAAACTGCAATGATTTATCTCTATCACAATGAAATTTTTTAAAGAT 535846 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| | ||| | || || ||| | | |||||||||||| ||||| | | |||| Sbjct 535845 TACACAAGTATGTAGTTCAGGGCTATATATTTATTGAATACATCAATGTAGTGTGTGTGC 535786 Query 179 GGCCC-AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAA 237 | || ||||||||||||| ||||| ||| || ||||| |||||| || || ||||| Sbjct 535785 GAACCTAGAACATCTAAGGACATCATAGAACTATTATTATCTCAAAGTTTTGTTTCCTAA 535726 Query 238 AAGGCCAT 245 | || ||| Sbjct 535725 ACGGTCAT 535718 >seq1013 Length=91576 Score = 123 bits (136), Expect = 4e-26 Identities = 77/80 (96%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| Sbjct 11094 GTACAAAGGGCAGGGACGTAGTCAACGCGAGC-TGATGACTCGCGCTTATTAGGAA-TTC 11151 Query 61 CTCGTTGAAGACCAACAATT 80 |||||||||||||||||||| Sbjct 11152 CTCGTTGAAGACCAACAATT 11171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751347380560