Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2 306 6e-81 seq240 228 1e-57 seq61 199 6e-49 seq140 152 8e-35 seq54 118 2e-24 >seq2 Length=81761211 Score = 306 bits (338), Expect = 6e-81 Identities = 207/231 (90%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 16205256 TCAGTTTAGCGCGCGTGCGGCCCAAAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 16205315 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA--CCAACCATAGT 133 |||||||||| || | | |||||||||||||||||||| | ||||||| ||| Sbjct 16205316 AAACTTCCATCTACTAAACGTAGATAGTCCCTCTAAGAAGCCAAAAAAGCCAACCAAAGT 16205375 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16205376 CGACCCGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 16205435 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 ||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 16205436 CTCCACCAACTAAGAACGGCCATGCACCACCACCCTCAAGATCAAGAAAGA 16205486 Score = 232 bits (256), Expect = 1e-58 Identities = 201/247 (81%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | | ||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 18228103 TACTCGTTGAATACATCAGTGTAGCGCGTGTGCGGCCCAGAACATCTAAGGACATCACAG 18228162 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 | ||||||||||||||||||| | | | || | | |||||||||||||||||| || Sbjct 18228163 ATCTGTTATTGCCTCAAACTTACGTGGCCTAAACGGTCATAGTCCCTCTAAGAAGCTGGC 18228222 Query 121 CACCAACCAT-AG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 ||| | | || || |||| |||||||| | |||||| |||||||| | ||| Sbjct 18228223 CACGGAGGTTGAGCTCTGCATAGCTAGTTAGCAGGCTGAGGTCTTGTTCGTTAGCAAAAT 18228282 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||| |||| ||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 18228283 TAACCAGATAAATTGCTCCATCAACTAAGAACGGCCATGCACCACCGGCCATAGAATCAA 18228342 Query 239 GAAAGAG 245 ||||||| Sbjct 18228343 GAAAGAG 18228349 Score = 174 bits (192), Expect = 3e-41 Identities = 180/234 (77%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 27 CGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATT 86 || |||||||||||||||||||||| ||||||||| ||||||||||||||||||| | | Sbjct 18228351 CGTGTGCGGCCCAGAACATCTAAGGACATCACAGATCTGTTATTGCCTCAAACTTACGTG 18228410 Query 87 GGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT-AG-TCGATGGGGCTA 144 | || | | |||||||||||||||||| ||||| | | || || |||| Sbjct 18228411 GCCTAAACGGTCATAGTCCCTCTAAGAAGCTGGCCACGGAGGTTGAGCTCTGCATAGCTA 18228470 Query 145 TTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACT 204 |||||||| | |||||| |||||||| | ||||||||||| |||| |||| Sbjct 18228471 GTTAGCAGGCTGAGGTCTTGTTCGTTAGCAAAATTAACCAGATAAATTGCTCC------- 18228523 Query 205 AAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| |||||| || ||||| ||| ||||||||||||||||| ||| |||||| Sbjct 18228524 -AGATCGGCCAGGCCCCACCGGCCACAGAATCAAGAAAGAGCTCTCAGTCTGTC 18228576 Score = 132 bits (146), Expect = 8e-29 Identities = 81/86 (94%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 173 CGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAG 232 |||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| Sbjct 60392535 CGGAATTAACCAGACAAATCGCTCGACCAACTAAGAACGGTCATGCACCACCACCCATAG 60392594 Query 233 AATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||| ||| |||||| Sbjct 60392595 AATCAAGAAAGAGCTCTCAGTCTGTC 60392620 Score = 107 bits (118), Expect = 3e-21 Identities = 95/117 (81%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||| | |||| ||| |||||||| | ||| ||| |||| |||| |||||||||||| Sbjct 51652591 TTAGCAAGCTAAGATCTTGTTCGTTAACAGAAATAATCAGATAAATTGCTCCACCAACTA 51652650 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAA---AGAG-CTATCAATCTGTC 258 |||||| |||||||||||||||| | ||||||||| || |||||||||| || Sbjct 51652651 AGAACGACCATGCACCACCACCCCAAAAATCAAGAACTTCCAGTCTATCAATCTCTC 51652707 >seq240 Length=3221721 Score = 228 bits (252), Expect = 1e-57 Identities = 190/229 (83%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2362670 TCAGTTTAGCGCGCGTGCGGCCCAAAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 2362729 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT-AG-T 133 |||||| ||| | || | | | |||||||||| ||||||| || | | | || | Sbjct 2362730 AAACTTTCATGGTCTAAACGACCATAGTCCCTCCAAGAAGCTAGTCGTGGAGGTTGAGCT 2362789 Query 134 CGATGGGGCTATTTAGCAGG--TTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | || |||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 2362790 CTGCATAGTTAGTTAGCAGGCCCCGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAAT 2362849 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||||||||||||| ||||||| ||||||||||||||||||| Sbjct 2362850 CGCTCCACCAACTAAGAACGGTCATGCACTACCACCCATAGAATCAAGA 2362898 >seq61 Length=1846253 Score = 199 bits (220), Expect = 6e-49 Identities = 178/223 (80%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 19 GTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 78 |||| |||| ||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 1314582 GTGTGGCGCACGTGCGGCCCAAAACCTCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 1314523 Query 79 CTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATG 138 |||| ||| || | | | ||| ||||| |||||||| | | | | | Sbjct 1314522 ATTCCGTTGCCTAAATGACCATAATCCCTATAAGAAGCTGGTTGTGGAGGTTGAACTACA 1314463 Query 139 GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCA 198 ||| |||| | | || |||||||||||| ||||||||| |||||||||||||||| Sbjct 1314462 TAACTAGTTAGTTTGCTGAGATCTCGTTCGTTAACGGAATTAAGCAGACAAATCACTCCA 1314403 Query 199 CCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||||||||| |||||||| |||||||||||||||||||| Sbjct 1314402 CCAACTAAGAACGACCATGCACAACCACCCATAGAATCAAGAA 1314360 >seq140 Length=1825301 Score = 152 bits (168), Expect = 8e-35 Identities = 183/247 (74%), Gaps = 9/247 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCC-AGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||| ||||| | | ||||| || ||||||||||||| ||||| ||| || ||||| || Sbjct 535803 TCAATGTAGTGTGTGTGCGAACCTAGAACATCTAAGGACATCATAGAACTATTATTATCT 535744 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT---- 130 |||| || || || | | ||| | ||||||||||||| | ||| Sbjct 535743 CAAAGTTTTGTTTCCTAAACGGTCATAATTCCTCTAAGAAGCCG---ATTGTGCATGTTG 535687 Query 131 -AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | || |||| ||||||| || ||||||||||| ||| | ||||||||| |||| Sbjct 535686 AACTCCTCAAAGCTAATTAGCAGATTGAGGTCTCGTTCATTAACAAAATTAACCAAACAA 535627 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 |||||||||||| |||||||| | |||||||||| |||||||||||||| |||||||| | Sbjct 535626 ATCACTCCACCATCTAAGAACAGTCATGCACCACTACCCATAGAATCAATAAAGAGCTCT 535567 Query 250 CAATCTG 256 | |||| Sbjct 535566 CGGTCTG 535560 >seq54 Length=3706658 Score = 118 bits (130), Expect = 2e-24 Identities = 176/245 (72%), Gaps = 5/245 (2%) Strand=Plus/Minus Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77 ||| | || |||||||| ||||||||||||||| ||||||| || | |||||| ||||| Sbjct 298638 AGTATTGCACGCGTGCGACCCAGAACATCTAAGTACATCACAAACTTATTATTGACTCAA 298579 Query 78 ACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG--TCG 135 ||||| | | | | | ||||||||||||| ||| | | | || || Sbjct 298578 ACTTCTGAGGCATAAATGACCATAGTCCCTCTAAAAAGTTGGATGCACAGGTTAAGCTCT 298519 Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195 | | | ||| || | | ||||||| ||||||| | ||||||||||| |||||||| Sbjct 298518 ACATATCCAATTAACAAGCTGAGGTCTCATTCGTTAACAAAATTAACCAGATAAATCACT 298459 Query 196 CCACCAACTAAGAACG-GCCATGCACCACCA-CCCATAGAATCAAGAAAGAGCTATCAAT 253 ||||| || ||| | | ||||||||||| |||||||||| | ||| ||| ||||| Sbjct 298458 TCACCATGTA-GAATGTGTTATGCACCACCACCCCATAGAATATAAAAAATGCTCTCAAT 298400 Query 254 CTGTC 258 |||| Sbjct 298399 TTGTC 298395 Score = 118 bits (130), Expect = 2e-24 Identities = 176/245 (72%), Gaps = 5/245 (2%) Strand=Plus/Minus Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77 ||| | || |||||||| ||||||||||||||| ||||||| || | |||||| ||||| Sbjct 309236 AGTATTGCACGCGTGCGACCCAGAACATCTAAGTACATCACAAACTTATTATTGACTCAA 309177 Query 78 ACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG--TCG 135 ||||| | | | | | ||||||||||||| ||| | | | || || Sbjct 309176 ACTTCTGAGGCATAAATGACCATAGTCCCTCTAAAAAGTTGGATGCACAGGTTAAGCTCT 309117 Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195 | | | ||| || | | ||||||| ||||||| | ||||||||||| |||||||| Sbjct 309116 ACATATCCAATTAACAAGCTGAGGTCTCATTCGTTAACAAAATTAACCAGATAAATCACT 309057 Query 196 CCACCAACTAAGAACG-GCCATGCACCACCA-CCCATAGAATCAAGAAAGAGCTATCAAT 253 ||||| || ||| | | ||||||||||| |||||||||| | ||| ||| ||||| Sbjct 309056 TCACCATGTA-GAATGTGTTATGCACCACCACCCCATAGAATATAAAAAATGCTCTCAAT 308998 Query 254 CTGTC 258 |||| Sbjct 308997 TTGTC 308993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796108501104