Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phalaenopsis_20hybrid_20cultivar_20[genbank_20GCA_5F002079205.1_2020
17-04-04] 149,149 sequences; 2,687,664,729 total letters
Query= AAMG01001821.1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
seq49234 123 2e-26
seq17646 109 5e-22
seq138301 105 6e-21
seq103696 98.7 8e-19
seq74089 95.1 1e-17
seq147906 80.6 2e-13
seq127656 78.8 8e-13
>seq49234
Length=584312
Score = 123 bits (136), Expect = 2e-26
Identities = 124/160 (78%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | || || ||| ||||||| |||||||||
Sbjct 318104 CGAGTTGCAGCCTGCAATCCGAACTGAGG-ACGGGTTTTGGAGTTAGCTCACCCTCGCGG 318162
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 318163 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 318222
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 318223 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 318262
>seq17646
Length=3430
Score = 109 bits (120), Expect = 5e-22
Identities = 99/125 (79%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 37 TTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGT 96
|| ||| ||||||| |||||||||| | ||| |||| ||| |||||||| ||||
Sbjct 260 TTTTGGAGTTAGCTCACCCTCGCGGGATCGCGACCCTTTGTCCCGGCCATTGTAGCACGT 319
Query 97 GTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156
||| |||| |||||||| ||||| ||||||||||||||| ||||||||||||| ||
Sbjct 320 GTGTCGCCCAGGGCATAAGGGGCATGATGACTTGACGTCATCCTCACCTTCCTCCGGCTT 379
Query 157 GTCAC 161
||||
Sbjct 380 ATCAC 384
>seq138301
Length=548446
Score = 105 bits (116), Expect = 6e-21
Identities = 120/160 (75%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||||| |||||||| ||| | | ||||| || ||| |||| ||| | |
Sbjct 312099 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCTGCCTTACAG 312157
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | || ||| | |||||||| ||||||| ||| |||||||||||||||
Sbjct 312158 CCTTGTTTTCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCTAACCCATAAGGGCCAT 312217
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| |||||||||||||||||||||||||||| || | ||||
Sbjct 312218 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTCTCTCAC 312257
Score = 98.7 bits (108), Expect = 8e-19
Identities = 69/79 (87%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142
|||||||| ||||||| |||| |||||||||||||||| ||||| |||||||||||||
Sbjct 316029 CCATTGTAGCACGTGTGTGGCCCAACCCATAAGGGCCATGCGGACTAGACGTCATCCCCA 316088
Query 143 CCTTCCTCCGGTTTGTCAC 161
||||||||| || | ||||
Sbjct 316089 CCTTCCTCCAGTCTCTCAC 316107
>seq103696
Length=22940
Score = 98.7 bits (108), Expect = 8e-19
Identities = 69/79 (87%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142
|||||||| ||||||| |||| |||||||||||||||| ||||| |||||||||||||
Sbjct 20927 CCATTGTAGCACGTGTGTGGCCCAACCCATAAGGGCCATGCGGACTAGACGTCATCCCCA 20986
Query 143 CCTTCCTCCGGTTTGTCAC 161
||||||||| || | ||||
Sbjct 20987 CCTTCCTCCAGTCTCTCAC 21005
>seq74089
Length=31305
Score = 95.1 bits (104), Expect = 1e-17
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 47 AGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCT 106
||||| |||||||||| | ||| |||| | | |||||||| ||||||| ||||
Sbjct 1177 AGCTCACCCTCGCGGGATCGCGACCCTTTATCCCAGCCATTGTAGCACGTGTGTCGCCCA 1236
Query 107 ACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156
|||||||| ||||| ||||||||||||||| ||||||||||||| ||
Sbjct 1237 GGGCATAAGGGGCATGATGACTTGACGTCATCCTCACCTTCCTCCGGCTT 1286
>seq147906
Length=463935
Score = 80.6 bits (88), Expect = 2e-13
Identities = 111/154 (72%), Gaps = 1/154 (1%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||| | ||||| | || || || ||||||| ||||||| |
Sbjct 338799 CGAGTTGCAGCCTGAAATTCAGACTAAGG-ACGGGTTTTGAAGTTAGCTCACCCTCGCAG 338741
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | |||||| | ||| ||||||| || |||| |||| ||||||||||||
Sbjct 338740 GATCGCGGCCGTTTGTCCCGCTCATTGTAGCACATGTGTCGCCCAGGGCATAAGGGCCAT 338681
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155
|| | || | ||||||| ||||||||| |||||
Sbjct 338680 GATGGTTTAATGTCATCCTCACCTTCCTTCGGTT 338647
>seq127656
Length=346162
Score = 78.8 bits (86), Expect = 8e-13
Identities = 114/160 (71%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||| ||| || |||||| ||| | || || ||| ||||||| ||||| | |
Sbjct 173556 CGAGTTTCAGCCTGCAATCCAAACTGAGG-ACGGATTTTGGAGTTAGCTCACCCTCACAG 173614
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | || |||| ||| |||||||| ||||||| || |||||| |||
Sbjct 173615 GATCACGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCTCCTAGAGCATAAGCAGCAT 173674
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||| ||| || ||||
Sbjct 173675 GATGACTTGACGTCATCCTCACCTTCCTTCGGCTTATCAC 173714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 415398929530
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |