Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24]
80,317 sequences; 556,480,649 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq80317 187 5e-45
seq21288 167 5e-39
seq380 147 4e-33
seq144 118 2e-24
seq3454 111 3e-22
seq80316 107 4e-21
>seq80317
Length=158462
Score = 187 bits (206), Expect = 5e-45
Identities = 181/230 (79%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 109701 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 109760
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | | ||| ||| | || | | |||||||||||| |||||
Sbjct 109761 GTGCAAAGGTTTCCTCGGGTCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 109819
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| |||
Sbjct 109820 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 109879
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 109880 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 109929
Score = 187 bits (206), Expect = 5e-45
Identities = 181/230 (79%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 134960 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 134901
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | | ||| ||| | || | | |||||||||||| |||||
Sbjct 134900 GTGCAAAGGTTTCCTCGGGTCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 134842
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| |||
Sbjct 134841 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 134782
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 134781 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 134732
>seq21288
Length=1381
Score = 167 bits (184), Expect = 5e-39
Identities = 177/232 (76%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 37 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 96
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227
| ||||| | |||| | || ||| ||| | | |||||||||||| ||||
Sbjct 97 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAGG 153
Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287
| | |||||||| | || | | ||| ||||| |||||||||||| |||| ||||||| |
Sbjct 154 GAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGAC 213
Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 214 GGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 265
>seq380
Length=291704
Score = 147 bits (162), Expect = 4e-33
Identities = 110/129 (85%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
|||||||||||| ||||| | |||||||| | |||| | ||| ||||||||||||||||
Sbjct 279078 AGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTC 279137
Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330
|| |||| ||||||| |||||| || ||||| ||||||||||| ||||||||||| |||
Sbjct 279138 GGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACT 279197
Query 331 CTGGGGATA 339
|| ||||||
Sbjct 279198 CTAGGGATA 279206
>seq144
Length=696361
Score = 118 bits (130), Expect = 2e-24
Identities = 109/137 (80%), Gaps = 1/137 (1%)
Strand=Plus/Plus
Query 204 TGCGCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGA 262
||| ||| || ||||||||||||||| | || ||||| | |||| | ||| |||| |||
Sbjct 695382 TGCCCACGAGGGCAAAGGCAAAAGGGAGCTTAACTGCAAGACCCACCCGTCGAGCAAGGA 695441
Query 263 CGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAA 322
||||||| | |||| ||||||| ||| | ||| ||||| || |||| ||| ||||||||
Sbjct 695442 TGAAAGTCAGCCTTAGTGATCCGACGGCGTTGAGTGGAAGGGTCGTCACTCAACGGATAA 695501
Query 323 AAGCTACCCTGGGGATA 339
||| ||| || ||||||
Sbjct 695502 AAGTTACTCTAGGGATA 695518
>seq3454
Length=11395
Score = 111 bits (122), Expect = 3e-22
Identities = 102/129 (79%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
|||| ||||||||||||| | |||||||| | |||| | ||| |||||||| |||| ||
Sbjct 2221 AGTGGAAAGGCAAAAGGGAGCTTGACTGCAAGACCCACCTGTCGAGCAGGGATGAAATTC 2162
Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330
| |||| |||| || || ||||||||| || |||| |||||| | |||||||| |||
Sbjct 2161 AGCCTTAGTGATTCGACGATGCTGAATGAAAAGGCCATCGCTCAATAGATAAAAGTTACT 2102
Query 331 CTGGGGATA 339
|| | ||||
Sbjct 2101 CTAGAGATA 2093
>seq80316
Length=715001
Score = 107 bits (118), Expect = 4e-21
Identities = 163/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
||||||| || || ||| ||||| ||||||||| |||||| |||||||||||||||
Sbjct 219479 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 219538
Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228
| | ||| || |||| || | ||| | || || | || || | |||
Sbjct 219539 TGTGCGAAGGTAGGCTCAAGCGTTGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 219593
Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288
|| |||||| || ||| | ||| | ||| |||||||||||| | || ||||||||
Sbjct 219594 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 219653
Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|| | | ||||| ||| |||||| |||||| |||| ||| | |||||||
Sbjct 219654 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 219704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981610965792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |