Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24]
80,317 sequences; 556,480,649 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq80317 132 1e-28
seq80316 111 3e-22
seq2630 89.7 1e-15
seq224 89.7 1e-15
seq13452 82.4 2e-13
>seq80317
Length=158462
Score = 132 bits (146), Expect = 1e-28
Identities = 196/279 (70%), Gaps = 18/279 (6%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| | || ||| || |
Sbjct 104024 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 103976
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| || ||| | | |||||||||| || | |||| | ||||| ||| |||||
Sbjct 103975 GC------TTCTTCTCCGAGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 103923
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 103922 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 103863
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 103862 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 103803
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| | | || ||| || || || | || |||| |||||
Sbjct 103802 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 103764
Score = 132 bits (146), Expect = 1e-28
Identities = 196/279 (70%), Gaps = 18/279 (6%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| | || ||| || |
Sbjct 140637 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 140685
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| || ||| | | |||||||||| || | |||| | ||||| ||| |||||
Sbjct 140686 GC------TTCTTCTCCGAGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 140738
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 140739 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 140798
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 140799 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 140858
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| | | || ||| || || || | || |||| |||||
Sbjct 140859 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 140897
>seq80316
Length=715001
Score = 111 bits (122), Expect = 3e-22
Identities = 144/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164
||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| ||
Sbjct 682153 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 682094
Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224
|||||||| ||||| ||||| || |||||||||||| ||| ||||| || | |||
Sbjct 682093 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 682034
Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284
||| | ||| |||| | |||| ||| ||| ||||| || || ||||||| ||
Sbjct 682033 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACGACCTAATACTAC 681974
Query 285 GCATCCCCATCGTACACCG 303
||| | |||| ||| ||
Sbjct 681973 GCAGGCTCATCAAACAGCG 681955
>seq2630
Length=17387
Score = 89.7 bits (98), Expect = 1e-15
Identities = 132/188 (70%), Gaps = 18/188 (10%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| | || ||| || |
Sbjct 17382 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 17334
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| || ||| | | |||||||||| || | |||| | ||||| ||| |||||
Sbjct 17333 GC------TTCTTCTCCGAGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 17281
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 17280 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 17221
Query 181 GAGTTTGG 188
|||| |||
Sbjct 17220 GAGTCTGG 17213
>seq224
Length=478311
Score = 89.7 bits (98), Expect = 1e-15
Identities = 112/151 (74%), Gaps = 2/151 (1%)
Strand=Plus/Minus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
|||||||||| || | |||| | ||||| ||| ||| | | ||| |||| ||
Sbjct 411172 AAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACATGGCATTGCTCCGTCAGGCTT 411114
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
||| |||||| || ||| | ||||||||||| ||||||||| | | || ||||||||
Sbjct 411113 TCGCCCATTGCAGAAAATTTCCTACTGCTGCCTCTCGTAGGAGTCTAGGCCATGTCTCAG 411054
Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACC 231
| ||||||||| || | |||||| ||||||
Sbjct 411053 TCCCAATGTGGCTGATCATCCTCT-AGAACC 411024
>seq13452
Length=1971
Score = 82.4 bits (90), Expect = 2e-13
Identities = 78/97 (80%), Gaps = 2/97 (2%)
Strand=Plus/Minus
Query 133 TCAGACTCTCGTCCATTGACCAATAT-TCCTCACTGCTGCCTCCCGTAGGAGTTTGGACC 191
|||| || ||| |||||| || || |||| ||||||||||||||||||||| || ||
Sbjct 433 TCAGGCTTTCGCCCATTGCAGAAAATATCCT-ACTGCTGCCTCCCGTAGGAGTCTGAGCC 375
Query 192 GTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228
|||||| ||||||| ||||| || | ||||||| ||
Sbjct 374 GTGTCTTAGTTCCAGTGTGGCTGATCATCCTCTCGGA 338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1067941571904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |