Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq336440 264 2e-68 seq875679 257 2e-66 seq1467185 188 1e-45 seq548166 183 4e-44 seq1997 170 3e-40 seq553685 168 1e-39 seq46444 152 8e-35 >seq336440 Length=309 Score = 264 bits (292), Expect = 2e-68 Identities = 184/211 (87%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||| | Sbjct 209 GTACAAAGGGCAGGGACATAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 152 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 |||||||| |||||||||||||||||||||||||| | |||||| Sbjct 151 CTCGTTGANNNNNNNNNNNNNNNNNGATCTATCCCCATCACGATGAAATTTGCCAAGATT 92 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 91 ACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 32 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTG 210 ||||||||||||||||||||||||||||||| Sbjct 31 GCCCAGAACATCTAAGGGCATCACAGACCTG 1 >seq875679 Length=646 Score = 257 bits (284), Expect = 2e-66 Identities = 190/222 (86%), Gaps = 21/222 (9%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||| |||||||||||||| ||||| |||||||||||||||||||| ||| | Sbjct 445 GTACAAATGGCATGGACGTAGTCAACGTGAGCT-GATGACTCGCGCTTACTAGGCATT-C 502 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||||||||||||||||| | |||||||||||| |||||| Sbjct 503 CTCGTTGAAGACCAACAATTCC------------------CGATGAAATTTCCCAAGATT 544 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| ||| ||| ||||||||||||||||||||||||||||| Sbjct 545 ACCCGGGCCTGTCGGCCAAGGCTATATACTTGTTGAATACATCAGTGTAGCGCGCGTGCG 604 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 221 |||||||||||||||||||||||||||||||||||||||||| Sbjct 605 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 646 >seq1467185 Length=324 Score = 188 bits (208), Expect = 1e-45 Identities = 145/176 (82%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 36 ATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCC 95 |||||||| |||||||||| ||| |||||||||||| |||| Sbjct 150 ATGACTCGAGCTTACTAGGCATT-CCTCGTTGAAGANNNNNNNNNNNNNNNNNNNNTCCC 208 Query 96 CATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTG 154 ||||||||||||||||| ||||||| | || |||||||||||||| ||| |||||||| Sbjct 209 CATCACGATGAAATTTCCCAAGATTAACTGGGCCTGTCGGCCAAGGCTATATACTCGTTG 268 Query 155 AATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTG 210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 269 AATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTG 324 >seq548166 Length=3957 Score = 183 bits (202), Expect = 4e-44 Identities = 154/186 (83%), Gaps = 11/186 (6%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| | ||||||| | ||||| || |||||||||| ||||||||||| ||| | Sbjct 3074 GTACAAAGGACGGGGACGTTGCCAACGTGAA-TTGATGACTCACGCTTACTAGGCATT-C 3131 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCAT--------CACGATGAAATTTC 112 ||||||||| || ||||||||||||||||||||||||| |||||||||||||| Sbjct 3132 CTCGTTGAAAACGAACAATTGCAATGATCTATCCCCATGACCCCATCACGATGAAATTTC 3191 Query 113 A-AAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCG 171 |||||||| ||| |||||| || |||| ||| |||||||||||||||||| ||| | Sbjct 3192 CCAAGATTACTCGGCCCTGTCAGCTAAGGCTATATACTCGTTGAATACATCAGCATAGTG 3251 Query 172 CGCGTG 177 |||||| Sbjct 3252 CGCGTG 3257 >seq1997 Length=10190 Score = 170 bits (188), Expect = 3e-40 Identities = 152/185 (82%), Gaps = 9/185 (5%) Strand=Plus/Plus Query 48 TACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA 107 ||||||| ||| |||||||||||||||| | ||||||||||| ||||| ||| |||||| Sbjct 8101 TACTAGGCATT-CCTCGTTGAAGACCAATAGTTGCAATGATCCATCCCG-TCATGATGAA 8158 Query 108 ATT-TCAAAGATTACCCGGACCTGTCGGCCAAGG-TGATAGACTCGTTGAATACATCAGT 165 ||| || ||||||||||| | ||||| || | | | |||||||||| | || | | Sbjct 8159 ATTATCCGAGATTACCCGGGC-----GGCCATGGCTTACATACTCGTTGAACATATTAAT 8213 Query 166 GTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| ||||| ||||||||||||||||||||||| ||||| ||| |||||||||||| Sbjct 8214 GTAGCGTGCGTGTGGCCCAGAACATCTAAGGGCATCGTAGACCCGTTGTTGCCTCAAACT 8273 Query 226 TCCGT 230 | ||| Sbjct 8274 TGCGT 8278 >seq553685 Length=3707 Score = 168 bits (186), Expect = 1e-39 Identities = 159/200 (80%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAG 116 |||||||||||||||||||||||||||||||| ||||| |||| | ||||||| | ||| Sbjct 30 TTCCTCGTTGAAGACCAACAATTGCAATGATCCATCCCAATCAAAAAGAAATTTACCAAG 89 Query 117 ATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 ||||||||| ||| |||||| | |||||||||||||||||||| ||| | || Sbjct 90 ATTACCCGGGATTGTTTCCCAAGGCTTTGTACTCGTTGAATACATCAGTGAAGCATGTGT 149 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTA 236 || || ||||||||||||||||| || || ||||||||||| |||||| | | ||| Sbjct 150 ACGACCAAGAACATCTAAGGGCATTGCATACTTGTTATTGCCTGAAACTTTGTTCGTCTA 209 Query 237 AAAGGCCAT-CTCCCTCGAA 255 || |||| |||||| || Sbjct 210 AACATCCATAGTCCCTCTAA 229 >seq46444 Length=5579 Score = 152 bits (168), Expect = 8e-35 Identities = 124/149 (83%), Gaps = 5/149 (3%) Strand=Plus/Plus Query 94 CCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGT 152 ||||||| |||||||||| |||||||||||| ||| | ||| || ||| ||| || Sbjct 4876 CCCATCATCATGAAATTTCTTAAGATTACCCGGGCCTATACGCCGAGACTATATACTAGT 4935 Query 153 TGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATC----ACAGACC 208 |||||| ||| |||||||||| | |||||||||||||||||| |||||| |||||| Sbjct 4936 TGAATATATCGGTGTAGCGCGTGAGCGGCCCAGAACATCTAATGGCATCACAGACAGACT 4995 Query 209 TGTTATTGCCTCAAACTTCCGTGGCCTAA 237 |||||||||||||||||||||| |||||| Sbjct 4996 TGTTATTGCCTCAAACTTCCGTCGCCTAA 5024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740477264505