Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq168918 131 7e-28 seq1152768 129 2e-27 seq397462 127 8e-27 seq335779 116 2e-23 seq134177 104 1e-19 seq527869 86.0 3e-14 seq527793 84.2 9e-14 seq1482532 77.0 1e-11 >seq168918 Length=923 Score = 131 bits (144), Expect = 7e-28 Identities = 201/281 (72%), Gaps = 7/281 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||||||||| || | ||| |||||||| | |||| ||| |||| |||| | | Sbjct 306 CGACCCGTCTTGAAATAGGGATCAAGGAGTGTGACATTCATGTGAGTCGACGGGTTCTGA 365 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT--GCACCATCG 520 |||| | | |||||| ||| ||| ||| |||| || | | || ||||| | Sbjct 366 AACCTGGGATGCGTAAGGAAGCTGAT--GAGC-GGGAGGCCCTCACGGGCCGCACCGCTG 422 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 |||| |||||| | | || || ||||||| ||||| |||| ||||||||||||| Sbjct 423 GCCGACCCTGATCTTCTGTGAAGGGTTTGAGTTGGAGCACGCCTGTCGGGACCCGAAAGA 482 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 |||||||||| || ||| | | ||| |||||||||||| ||||||||| |||| Sbjct 483 TGGTGAACTACGCGTGAGCGTGTCGTAGCTAGAGGAAACTCTAGTGGAGGCTTCAAGCGA 542 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 | ||| |||| |||||| ||||| | ||||| || || || Sbjct 543 TACTGACGTGAAAATCGTTCGTCTGACTTGGGAATTGGAGC 583 >seq1152768 Length=349 Score = 129 bits (142), Expect = 2e-27 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || || || |||||||| |||||||||||||||||| | || ||| |||| | | | Sbjct 322 GAGGCGCCGTCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAGACTCC 263 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 || || |||||| | ||| |||||||||||||| ||||||| | || |||||| Sbjct 262 GTCCAAGGCTAAACACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGANNN 203 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||| |||||| ||||||||| ||| | | |||||||| | ||||||||| Sbjct 202 NAAGGACTTTGAAAAGAGAGTCAAAGACTGCTTGAAATTGCCGGGAGGGAAGCG 149 >seq397462 Length=302 Score = 127 bits (140), Expect = 8e-27 Identities = 117/148 (79%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || || || |||||||| |||||||||||||||||| | || ||| |||| | | | Sbjct 275 GAGGCGCCGTCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAGACTCC 216 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 || || |||||||| | | |||||||||||||| ||||||| | || ||||||||| Sbjct 215 GTCCAAGGCTAAATACAGACGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGA 156 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAG 173 |||| ||| || ||||||||| ||| || Sbjct 155 AAAGGACTGTGAAAAGAGAGTCAAAGAG 128 >seq335779 Length=1130 Score = 116 bits (128), Expect = 2e-23 Identities = 123/162 (76%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || | | |||| | | | || || || Sbjct 862 TCAACGAGTCG-GTTGTTTGGGAATGCAGCCCAAATCGAGCGGTAGACTCCGTCCAAGGC 804 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||| ||| |||||| |||||| ||||||| | || ||||||||||||| |||| Sbjct 803 TAAATGCAGGCGAGAGACGTATAGCGAACAAGTACTGCGAGGGAAAGATGAAAAGGACTT 744 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || ||||||| ||| || | ||||||| || |||||| Sbjct 743 TGNNNAGAGAGTCAAAGAGTGCTTGAAATTACCGAGAGGGAA 702 >seq134177 Length=1337 Score = 104 bits (114), Expect = 1e-19 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 512 GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGA 571 |||||| | |||| ||| || | | || | || | || ||||| | ||| ||| Sbjct 110 GCACCACTGGCCGACCCTAATCTTATGTGAACGGTTCGTGTTGGAGCACACATGTCAGGA 169 Query 572 CCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGC 631 || ||||||||||||||||||||||| | |||||| ||||||||||||||||| |||| Sbjct 170 CCTGAAAGATGGTGAACTATGCCTGAGCGGCGTGAAGTCAGAGGAAACTCTGGTGCAGGC 229 Query 632 TCGCAGCGGTTCTGGCGTGCAAATC 656 || |||| | ||| | |||||||| Sbjct 230 TCAAAGCGATACTGACATGCAAATC 254 >seq527869 Length=311 Score = 86.0 bits (94), Expect = 3e-14 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 72 GGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAG 131 ||| |||| | | | || || |||||||| ||| |||||||||||||| ||||||| | Sbjct 83 GGGCGGTAGACTCCGTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCG 142 Query 132 TGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGT 166 || ||||| ||||||| |||||| ||||||||| Sbjct 143 CGAGGGAAAGGTGAAAAGGACTTTGAAAAGAGAGT 177 >seq527793 Length=311 Score = 84.2 bits (92), Expect = 9e-14 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 72 GGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAG 131 ||| |||| | | | || || |||||||| ||| |||||||||||||| ||||||| | Sbjct 83 GGGCGGTAGACTCCGTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCG 142 Query 132 TGATCGAAAGATGAAAAGCACTTTGGAAAGAGAG 165 || ||| ||||||||| |||||| |||||||| Sbjct 143 CGAGGGAATGATGAAAAGGACTTTGAAAAGAGAG 176 >seq1482532 Length=3135 Score = 77.0 bits (84), Expect = 1e-11 Identities = 64/77 (83%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 606 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC-A 664 ||||||||||||||||||||||||||||| |||| | | | ||||||||| ||||| | Sbjct 1390 AAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATACCAACATGCAAATCGTTCGTCTA 1449 Query 665 AATTTGGGTATAGGGGC 681 | || ||||| || ||| Sbjct 1450 ACTTGGGGTACAGTGGC 1466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2046072384850