Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq895097 145 1e-32 seq748353 120 4e-25 seq185608 120 4e-25 seq1532158 118 1e-24 seq1164341 109 8e-22 seq1108831 105 9e-21 seq719394 102 1e-19 seq1214328 100 4e-19 seq198659 91.5 2e-16 seq6721 77.0 4e-12 seq1011921 73.4 5e-11 seq860281 73.4 5e-11 >seq895097 Length=376 Score = 145 bits (160), Expect = 1e-32 Identities = 181/244 (74%), Gaps = 13/244 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 347 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 289 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| ||||||||| || ||| || | | ||| || || |||| | Sbjct 288 TGTGTTTTTAATAAACAGTCACTACCCCCTGGTATGTGC--CCCTTTCCTAATCAAAAGA 231 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||| ||||||||||| ||||||||||| ||||| Sbjct 230 T--------AGGAGAG-CACCCCTTCTCCCAAAGTTACGGGGTCATTTTGCCGAGTTCCT 180 Query 186 TAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244 | || |||| | ||| |||| |||||| ||||| ||| ||||||||||||||| Sbjct 179 TCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTAACTGTTCACCTGTGTCGGTTTGG 120 Query 245 GGTA 248 |||| Sbjct 119 GGTA 116 >seq748353 Length=630 Score = 120 bits (132), Expect = 4e-25 Identities = 175/244 (72%), Gaps = 14/244 (6%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||| ||||||| ||||| | || |||||| |||| ||| ||| | || Sbjct 405 CCTTCCAGCACTGGGCAGGTGTCAGACTCTACACATCGTGTTACA--CTTAGCAGAGTCC 348 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||| | |||| ||| ||| ||| || | | ||| | | | |||| | Sbjct 347 TGTGTTTTAAATAAATAGTTGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 290 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| |||||||| || ||||| Sbjct 289 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCTGAGTTCCT 239 Query 186 TAACCACAGTTCACCCGAA-CGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244 | || |||| | |||| | || |||||| |||||| || ||||||||||||||| Sbjct 238 TCGACATGGTTCTCTCGAAGCACCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGG 179 Query 245 GGTA 248 |||| Sbjct 178 GGTA 175 >seq185608 Length=1583 Score = 120 bits (132), Expect = 4e-25 Identities = 177/247 (72%), Gaps = 13/247 (5%) Strand=Plus/Minus Query 3 TATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGG 62 || ||||||| ||||||| ||| || || || ||||||| | ||||| ||| ||| | Sbjct 1303 TAACCTTCCAGCACCGGGTAGGTGTTAGACCCTATACATTGTGTTACCA-CTTAGCAGAG 1245 Query 63 ACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAAC 122 |||||||||||| |||||||||||| ||| || | | ||| || | | |||| Sbjct 1244 TCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCTACTTTCCTAA--TCAAA 1187 Query 123 ACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATT 182 | | || || || ||||||||||||||||||| | | || |||||||| || Sbjct 1186 AGAT--------AGGAGAGG-ACCCCTTCTCCCGAAGTTAAAGTGTCAGTTTGCCGAGTT 1136 Query 183 CCTTAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 |||| || |||| | ||| | || |||||| |||||| || ||| |||||||||| Sbjct 1135 CCTTCGACATGGTTCTCTCGATGCACCCTAGTATACTCTACTTGTTCACTTGTGTCGGTT 1076 Query 242 TACGGTA 248 | |||| Sbjct 1075 TGGGGTA 1069 >seq1532158 Length=481 Score = 118 bits (130), Expect = 1e-24 Identities = 177/245 (72%), Gaps = 15/245 (6%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| |||| ||| ||| | || Sbjct 414 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGATACCA-CTTAGCAGAGTCC 356 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTC-TATTCTCTGCGACCACCACCAGCTCAACAC 124 | |||||||| |||| ||| ||| ||| | || | | ||| | | | |||| | Sbjct 355 TATGTTTTTAATAAATAGT-GCTACCCCCCTAGTATGTGCCGCTTTCCTAA--TCAAAAG 299 Query 125 GTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCC 184 | || || | |||||||||||||||||||||| || ||||||||||| |||| Sbjct 298 AT--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGCGGTCATTTTGCCGAGTTCC 248 Query 185 TTAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTA 243 || || |||| | ||| |||| || ||| |||||| || ||||||||||||||| Sbjct 247 TTCGACATGGTTCTCTCGACGCGCCCTAATATACTCTACTTGTTCACCTGTGTCGGTTTG 188 Query 244 CGGTA 248 |||| Sbjct 187 GGGTA 183 >seq1164341 Length=319 Score = 109 bits (120), Expect = 8e-22 Identities = 173/246 (70%), Gaps = 19/246 (8%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | ||| Sbjct 319 CTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACC-ACTTAGCAGAGTCCT 261 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||||| |||||||||||| ||| || | | || | | | || | Sbjct 260 GTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTG-------CCTCTGTTCTA----- 213 Query 127 CGTTCACCAGCAGTG---GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTC 183 ||| || | | ||| |||||||||| ||||||| || |||||| |||| ||| Sbjct 212 --ATCAAAAGAAAGGAGAGCATCCCTTCTCCCAAAGTTACATGGTCATTTTTCCGAGTTC 155 Query 184 CTTAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 || || |||| | ||| |||| |||||| |||||| || ||||||||| ||||| Sbjct 154 GTTCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTACTTGTTCACCTGTGTAGGTTT 95 Query 243 ACGGTA 248 |||| Sbjct 94 GGGGTA 89 >seq1108831 Length=664 Score = 105 bits (116), Expect = 9e-21 Identities = 173/244 (71%), Gaps = 14/244 (6%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||| | ||||| | ||||||||| ||||| ||| ||| | || Sbjct 249 CCTTCCAGCACCGGGCATGTGTCAGACACTATACATCGTGTTACCA-CTTAGCAGAGTCC 307 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | || | || | Sbjct 308 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCTCTTTC-----CTAATCA-G 361 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | | || || ||||||||||||| | ||||| |||| ||||||||||| ||||| Sbjct 362 AAGAT----AGGAG-AGCACCCCTTCTCCTG-AGTTATGGGGTCATTTTGCCGAGTTCCT 415 Query 186 TAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244 | || |||| | ||| |||| || |||||| || ||||| |||||| || Sbjct 416 TCGACATGGTTCTCTCGACGCGCCCNNNNATACTCTACTTGTTCACCTATGTCGGCTTGG 475 Query 245 GGTA 248 |||| Sbjct 476 GGTA 479 >seq719394 Length=674 Score = 102 bits (112), Expect = 1e-19 Identities = 88/108 (81%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||||||||||||||||||||||||| ||||||||||| |||||| || |||| | | Sbjct 11 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTC 70 Query 202 GA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || |||| |||||| |||||| || ||| ||||||||| | |||| Sbjct 71 GACGCGCCCTAGTATACTCTACTTGTTCACATGTGTCGGTATGGGGTA 118 >seq1214328 Length=305 Score = 100 bits (110), Expect = 4e-19 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||| || || |||||||||| ||||||| | |||| | Sbjct 83 GGCACCCCTTCTCCCGAAGTTATGGTGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 142 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 143 CACGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 190 >seq198659 Length=5558 Score = 91.5 bits (100), Expect = 2e-16 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 138 AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTC 197 || ||||| |||| ||| ||||||||| ||| |||||||||| || ||||| | |||| Sbjct 3267 AGGGGCACTCCTTTTCCTGAAGTTACGAGGCTATTTTGCCGAGTTTCTTAAAGAGAGTTG 3326 Query 198 ACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | || | ||| ||||||||||||| ||||||||||| |||| Sbjct 3327 TCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCAGTTT 3371 >seq6721 Length=3825 Score = 77.0 bits (84), Expect = 4e-12 Identities = 45/47 (96%), Gaps = 0/47 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 |||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 324 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 278 >seq1011921 Length=324 Score = 73.4 bits (80), Expect = 5e-11 Identities = 66/82 (80%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| |||||||| |||| || |||||| | ||||| | ||| || |||| Sbjct 205 CCTTCCGGCACTGGGCAGGCATCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 263 Query 66 TGTGTTTTTAGTAAACAGTCGC 87 ||||||||| |||||||||||| Sbjct 264 TGTGTTTTTGGTAAACAGTCGC 285 >seq860281 Length=857 Score = 73.4 bits (80), Expect = 5e-11 Identities = 81/108 (75%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||||||| ||| ||| |||||| | | || |||| | |||| | Sbjct 475 GGCACCCCTTCTCCCGAAGATACAAGGCTATTTTGTCAAGTTTCTTAGAGAGAGTTGTCT 534 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | ||| ||||| |||||| |||||||||||||||| |||| Sbjct 535 CATGCCCCTAGGTATTTTCTACCCACCCACCTGTGTCGGTTTCGGGTA 582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 683759857011