Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07]
1,581,707 sequences; 1,684,931,674 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq895097 145 1e-32
seq748353 120 4e-25
seq185608 120 4e-25
seq1532158 118 1e-24
seq1164341 109 8e-22
seq1108831 105 9e-21
seq719394 102 1e-19
seq1214328 100 4e-19
seq198659 91.5 2e-16
seq6721 77.0 4e-12
seq1011921 73.4 5e-11
seq860281 73.4 5e-11
>seq895097
Length=376
Score = 145 bits (160), Expect = 1e-32
Identities = 181/244 (74%), Gaps = 13/244 (5%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | ||
Sbjct 347 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 289
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||||| ||||||||| || ||| || | | ||| || || |||| |
Sbjct 288 TGTGTTTTTAATAAACAGTCACTACCCCCTGGTATGTGC--CCCTTTCCTAATCAAAAGA 231
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | ||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 230 T--------AGGAGAG-CACCCCTTCTCCCAAAGTTACGGGGTCATTTTGCCGAGTTCCT 180
Query 186 TAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244
| || |||| | ||| |||| |||||| ||||| ||| |||||||||||||||
Sbjct 179 TCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTAACTGTTCACCTGTGTCGGTTTGG 120
Query 245 GGTA 248
||||
Sbjct 119 GGTA 116
>seq748353
Length=630
Score = 120 bits (132), Expect = 4e-25
Identities = 175/244 (72%), Gaps = 14/244 (6%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||| ||||||| ||||| | || |||||| |||| ||| ||| | ||
Sbjct 405 CCTTCCAGCACTGGGCAGGTGTCAGACTCTACACATCGTGTTACA--CTTAGCAGAGTCC 348
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||| | |||| ||| ||| ||| || | | ||| | | | |||| |
Sbjct 347 TGTGTTTTAAATAAATAGTTGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 290
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | ||||||||||||||||||||||||| |||||||| || |||||
Sbjct 289 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCTGAGTTCCT 239
Query 186 TAACCACAGTTCACCCGAA-CGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244
| || |||| | |||| | || |||||| |||||| || |||||||||||||||
Sbjct 238 TCGACATGGTTCTCTCGAAGCACCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGG 179
Query 245 GGTA 248
||||
Sbjct 178 GGTA 175
>seq185608
Length=1583
Score = 120 bits (132), Expect = 4e-25
Identities = 177/247 (72%), Gaps = 13/247 (5%)
Strand=Plus/Minus
Query 3 TATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGG 62
|| ||||||| ||||||| ||| || || || ||||||| | ||||| ||| ||| |
Sbjct 1303 TAACCTTCCAGCACCGGGTAGGTGTTAGACCCTATACATTGTGTTACCA-CTTAGCAGAG 1245
Query 63 ACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAAC 122
|||||||||||| |||||||||||| ||| || | | ||| || | | ||||
Sbjct 1244 TCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCTACTTTCCTAA--TCAAA 1187
Query 123 ACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATT 182
| | || || || ||||||||||||||||||| | | || |||||||| ||
Sbjct 1186 AGAT--------AGGAGAGG-ACCCCTTCTCCCGAAGTTAAAGTGTCAGTTTGCCGAGTT 1136
Query 183 CCTTAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241
|||| || |||| | ||| | || |||||| |||||| || ||| ||||||||||
Sbjct 1135 CCTTCGACATGGTTCTCTCGATGCACCCTAGTATACTCTACTTGTTCACTTGTGTCGGTT 1076
Query 242 TACGGTA 248
| ||||
Sbjct 1075 TGGGGTA 1069
>seq1532158
Length=481
Score = 118 bits (130), Expect = 1e-24
Identities = 177/245 (72%), Gaps = 15/245 (6%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||||||||||| ||||| | ||||||||| |||| ||| ||| | ||
Sbjct 414 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGATACCA-CTTAGCAGAGTCC 356
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTC-TATTCTCTGCGACCACCACCAGCTCAACAC 124
| |||||||| |||| ||| ||| ||| | || | | ||| | | | |||| |
Sbjct 355 TATGTTTTTAATAAATAGT-GCTACCCCCCTAGTATGTGCCGCTTTCCTAA--TCAAAAG 299
Query 125 GTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCC 184
| || || | |||||||||||||||||||||| || ||||||||||| ||||
Sbjct 298 AT--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGCGGTCATTTTGCCGAGTTCC 248
Query 185 TTAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTA 243
|| || |||| | ||| |||| || ||| |||||| || |||||||||||||||
Sbjct 247 TTCGACATGGTTCTCTCGACGCGCCCTAATATACTCTACTTGTTCACCTGTGTCGGTTTG 188
Query 244 CGGTA 248
||||
Sbjct 187 GGGTA 183
>seq1164341
Length=319
Score = 109 bits (120), Expect = 8e-22
Identities = 173/246 (70%), Gaps = 19/246 (8%)
Strand=Plus/Minus
Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66
|||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | |||
Sbjct 319 CTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACC-ACTTAGCAGAGTCCT 261
Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126
||||||||| |||||||||||| ||| || | | || | | | || |
Sbjct 260 GTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTG-------CCTCTGTTCTA----- 213
Query 127 CGTTCACCAGCAGTG---GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTC 183
||| || | | ||| |||||||||| ||||||| || |||||| |||| |||
Sbjct 212 --ATCAAAAGAAAGGAGAGCATCCCTTCTCCCAAAGTTACATGGTCATTTTTCCGAGTTC 155
Query 184 CTTAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242
|| || |||| | ||| |||| |||||| |||||| || ||||||||| |||||
Sbjct 154 GTTCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTACTTGTTCACCTGTGTAGGTTT 95
Query 243 ACGGTA 248
||||
Sbjct 94 GGGGTA 89
>seq1108831
Length=664
Score = 105 bits (116), Expect = 9e-21
Identities = 173/244 (71%), Gaps = 14/244 (6%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||||||||| | ||||| | ||||||||| ||||| ||| ||| | ||
Sbjct 249 CCTTCCAGCACCGGGCATGTGTCAGACACTATACATCGTGTTACCA-CTTAGCAGAGTCC 307
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||||| |||||||||||| ||| || | | ||| | | || | || |
Sbjct 308 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCTCTTTC-----CTAATCA-G 361
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| | || || ||||||||||||| | ||||| |||| ||||||||||| |||||
Sbjct 362 AAGAT----AGGAG-AGCACCCCTTCTCCTG-AGTTATGGGGTCATTTTGCCGAGTTCCT 415
Query 186 TAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244
| || |||| | ||| |||| || |||||| || ||||| |||||| ||
Sbjct 416 TCGACATGGTTCTCTCGACGCGCCCNNNNATACTCTACTTGTTCACCTATGTCGGCTTGG 475
Query 245 GGTA 248
||||
Sbjct 476 GGTA 479
>seq719394
Length=674
Score = 102 bits (112), Expect = 1e-19
Identities = 88/108 (81%), Gaps = 1/108 (1%)
Strand=Plus/Plus
Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201
|||||||||||||||||||||||||| ||||||||||| |||||| || |||| | |
Sbjct 11 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTC 70
Query 202 GA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| |||| |||||| |||||| || ||| ||||||||| | ||||
Sbjct 71 GACGCGCCCTAGTATACTCTACTTGTTCACATGTGTCGGTATGGGGTA 118
>seq1214328
Length=305
Score = 100 bits (110), Expect = 4e-19
Identities = 87/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||||||||||||||||||| || || |||||||||| ||||||| | |||| |
Sbjct 83 GGCACCCCTTCTCCCGAAGTTATGGTGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 142
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| | ||| ||||||||||||| |||||||||||||||| ||||
Sbjct 143 CACGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 190
>seq198659
Length=5558
Score = 91.5 bits (100), Expect = 2e-16
Identities = 83/105 (79%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 138 AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTC 197
|| ||||| |||| ||| ||||||||| ||| |||||||||| || ||||| | ||||
Sbjct 3267 AGGGGCACTCCTTTTCCTGAAGTTACGAGGCTATTTTGCCGAGTTTCTTAAAGAGAGTTG 3326
Query 198 ACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242
| || | ||| ||||||||||||| ||||||||||| ||||
Sbjct 3327 TCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCAGTTT 3371
>seq6721
Length=3825
Score = 77.0 bits (84), Expect = 4e-12
Identities = 45/47 (96%), Gaps = 0/47 (0%)
Strand=Plus/Minus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187
|||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 324 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 278
>seq1011921
Length=324
Score = 73.4 bits (80), Expect = 5e-11
Identities = 66/82 (80%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| |||||||| |||| || |||||| | ||||| | ||| || ||||
Sbjct 205 CCTTCCGGCACTGGGCAGGCATCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 263
Query 66 TGTGTTTTTAGTAAACAGTCGC 87
||||||||| ||||||||||||
Sbjct 264 TGTGTTTTTGGTAAACAGTCGC 285
>seq860281
Length=857
Score = 73.4 bits (80), Expect = 5e-11
Identities = 81/108 (75%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
||||||||||||||||||| ||| ||| |||||| | | || |||| | |||| |
Sbjct 475 GGCACCCCTTCTCCCGAAGATACAAGGCTATTTTGTCAAGTTTCTTAGAGAGAGTTGTCT 534
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| | ||| ||||| |||||| |||||||||||||||| ||||
Sbjct 535 CATGCCCCTAGGTATTTTCTACCCACCCACCTGTGTCGGTTTCGGGTA 582
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 683759857011
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |