Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq1214328 86.0 7e-15 seq185608 75.2 1e-11 seq63476 73.4 4e-11 >seq1214328 Length=305 Score = 86.0 bits (94), Expect = 7e-15 Identities = 121/166 (73%), Gaps = 3/166 (2%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| || | ||| || |||| ||| || |||| || | | | |||| Sbjct 184 AAACCGACACAGGTGGGTAGGTAGAGAATACCTAGGGGCGTGAGACAA-CTCTCTCTAAG 126 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | | | ||||||||||| || |||| || | || ||| ||| || Sbjct 125 GAACTCGGCAAAATAGCACCATAACTTCGGGAGAAGGGGTGCCCCCTCACAAAAGGG-GG 67 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 66 CCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 21 >seq185608 Length=1583 Score = 75.2 bits (82), Expect = 1e-11 Identities = 79/103 (77%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTT-GAGTGAATCACGGTTAA 82 ||||| |||||| || | || || ||||||| || || | ||| ||| || | || Sbjct 1074 CAAACCGACACAAGTGAACAAGTAGAGTATACTAGGGTGCATCGAGAGAACCATGTCGAA 1133 Query 83 GGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCC 125 |||||| ||||||||||| || ||||||||||| || |||||| Sbjct 1134 GGAACTCGGCAAACTGACACTTTAACTTCGGGAGAAGGGGTCC 1176 >seq63476 Length=1998 Score = 73.4 bits (80), Expect = 4e-11 Identities = 118/166 (71%), Gaps = 3/166 (2%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| || | |||| ||| |||| ||| || |||| || | | | |||| Sbjct 627 AAACCGACACAAGTGGGTGGGTAGAAAATACCTAGGGGCATGAGACAA-CTCTCTCTAAG 569 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| | ||| | || |||| |||||||| || |||| || | || ||| || || Sbjct 568 GAACTTGAGAAAATAGCCTTGTATCTTCGGGAGAAGGGGTGCCCTCTCACAAAAGGT-GG 510 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 |||| || || | ||| |||||||| |||||||||||| || Sbjct 509 CCGCAATGACCAGACTCGGGCGACTGTTTACCAAAAACACAGGTCT 464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 523060535778